G370629


Basic Information

Item Value
gene id G370629
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14413810 ~ 14420255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU421207
aaacattactgaacataaagCGCCAAAGtaaacagatttttggatataaatatgaactttatcgaacaaaacatgaagtcctatgatgaagatcatcaaaggttagtgattaattttatctctatttctgctttttgtgactcctctctttggctggaaaaatggctgtttttctgtgactagttgctgaccgaACATAATCGAATGGTATCCTTTCGTCGTAAAGCTTTTTTCAAATCAGACACTGTCGtgagattaacaacaagtttatctttaaaatagtgtaaaatacttgtatgtttgaggaattttaattataagATTTCTGTTCTTTGAATTTGaagccctgcactttcactggctgatgtcatatcaatcccgttaacggcaTCTCAGCAGTAAGAAGTTAACACTCAACATCAATAAACGTTTAAGATGATAATGGCGTTTCATTGCAAAGCAGGCCTGggaatatgtgtgtttgtgtcagaatGTATACGCGTGTCTGTGTTCCTAGTCTAACCTGGCTGCAGCCAGGTCCTTCAGCTCCATCCAGTGCTCCTCAAACTGGGCCAGCCTCTGCTCAATCTCATCCTGGCCGATGGTGTTGTCATCGGACAGCTTCTTCCCTGTGTCCTGCACAGACTGGATGGCCGGCTCATGGGCCCCCAACTCAGCCTCCAGCCTCTTGTGTTTCTTCCTCAGATTCTGCACTCCAGTCAAATCACGTCCATAGTCCTCCGAACTCACTAGCAATTTCTTTTCTctggatagagaacagagagtgaaagagagtgttAGTAATCACAATGTCTCAACATCGAAAAACCCTCAGATGTCGACTTGCATCCATTCCTCCACAACTCCAGGGGGCGCTCTTACTTGATCCAAGACTCCTCGTCGTCCAGGTCCCTGAAGAACTGGTGTAGGCGGTGCGACTCGTTGAGCTTTGCACGGCGGCCAGTGGCCATGCTCTTGATCTTGGTGAAGCGTCCATTGACAGCGTCGCGCTTGTCCTTAACCTGGGTGGGGTCGAAGGCCGTGCTGGCCGTCAGGCTGTCAGCCTGGCCGTTCAGGTCCTTCAGACGATCCTCATGAGCAGAGATGTCGGCTTCCAGAAGCTGATGTTTCTTCAGCAGGTTGTTGACGGAGGCCAGGTCTTTGCCATAATCCTCAGAGGCAAGAAGGGCCTCGACcTCAGAGAGCCAGAAGTCAAAGTCCTTAATGCCAGTGTTGAAGTTCTGCTGCTTGTTGGCTTCTTTCAGCTTCTGGCTCTTCTCTGCCGACTTGTTCACCAGGAACTGCCACTGCTCGTCCAGAGCACCCAGACGTGActGAACCGCATCCTCACTGCCGGAGCAGGCCCCTCTATGGATGAGGGCGTTGCCAGTGTCGATAACCCCACGGATGCGGTCTGCGTTGGCATGCAACTCCGCCTCGAAGGCCTGGTGCTTCTGGTGCTTACTCTGAGCTCAGGCaggggaaggggtgagagagcgGGAGTGAGAACTATGGGAGGGTGTGGGTTGGTGGTGGATGGGTGACATCTCCCTTAGATTGTGTGAAAACACAATCCGGTAGGCTACTTAGAAATAATGTGTTGGTAAGGGTTGATGTACAATTTGAAAATAAGGAGGCTGAGTACATGTATATATATTAGAATGGAACTTTTATAAGTGGCAGTCATTTTTCATGCATGTTTGTGTTTGGAGAGTAAATGTCTCCTAACTTGGGGCTATTGTTGatggatatacacacacatatatacactaaGTCTACATCCAGGAGATAACTGTAGGACAAAATCCACACAAAAGGTGAGgtcataataaaaaataaaaaagatgagGTCACAAATGTGAAATTCAGACACCACCAAATGAAGACAGACAATGTGTCGGACTGACTTCTACAAGACAGGAAACACCAAGGTGACAAACACAAAATGGAGTTGGAACAGACCCACAACGGGGCCACGACAAATGTTACTTTTCAAGAGTACCTAGAAGAGGTCAGGGTCTTTTCAAAACTCGTTCCACAATGTTTTTACACACCGAGAGAGAGCAAACAAAAACCTTATGCGAGGTGTCTAAGCTAGGGCTGTGGCGATCACGAAATTGTCAGCcgatgattgtcaagcaaataactggtCGGTCTcaaggtaattgaccgttaattaacaaacacatttagcatctcctggcttccacacatagcctacaagccatttTTTTTTAAGTCTAAAAAAATCagtgtaatatagcctataccttcacaataaatccattatttattttagacaggtctaaagaagcatgatatgaagaaaatgtggtCTGTCAGAATaaaagaatagcatactctgagttgtccttatgttagaaCCTGATGTGTCTATGCCAAATGGTTGCGGGC

Function

NR:

description
spectrin alpha chain, non-erythrocytic 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421207 True 2415 lncRNA 0.45 4 14413810 14420255

Neighbor

gene id symbol gene type direction distance location
LOC110523260 NA coding downstream 63529 14346815 ~ 14350281 (-)
smarcb1b LOC100380734 coding downstream 80505 14313714 ~ 14333305 (-)
chchd10 chchd10 coding downstream 154678 14255800 ~ 14259132 (-)
LOC118964567 LOC106570461 coding downstream 170075 14243054 ~ 14243735 (-)
LOC118964566 NA coding downstream 188465 14222189 ~ 14225345 (-)
dync2i2 wdr34 coding upstream 9214 14429469 ~ 14433766 (-)
LOC110523265 LOC106570595 coding upstream 13991 14434246 ~ 14438495 (-)
pkn3 pkn3 coding upstream 40563 14460818 ~ 14480420 (-)
slc25a25b LOC106570619 coding upstream 67495 14487750 ~ 14535122 (-)
LOC110523275 NA coding upstream 345921 14766176 ~ 14769160 (-)
G370631 LOC102778734 non-coding downstream 3763 14409094 ~ 14410047 (-)
G370659 NA non-coding downstream 43538 14370067 ~ 14370272 (-)
G370658 NA non-coding downstream 44970 14368625 ~ 14368840 (-)
G370656 NA non-coding downstream 47966 14363537 ~ 14365844 (-)
G370653 odf2 non-coding downstream 55687 14357446 ~ 14358123 (-)
G370710 NA non-coding upstream 105889 14526144 ~ 14526438 (-)
G370713 NA non-coding upstream 108849 14529104 ~ 14529556 (-)
G370729 LOC106570653 non-coding upstream 126629 14546884 ~ 14547869 (-)
G370762 NA non-coding upstream 166762 14587017 ~ 14588624 (-)
G370761 NA non-coding upstream 208846 14629101 ~ 14630064 (-)
G370333 NA other downstream 205105 14207190 ~ 14208705 (-)
G368921 NA other downstream 1707718 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2277020 12134052 ~ 12136790 (-)
G365752 NA other downstream 5223712 9189669 ~ 9190098 (-)
G364754 NA other downstream 5363102 9047542 ~ 9099000 (-)
G370635 NA other upstream 7083 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 572873 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 703220 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 1275837 15693396 ~ 15707607 (-)
G372122 NA other upstream 1555351 15975606 ~ 15976116 (-)

Expression


Co-expression Network