G370402 (LOC101064074)


Basic Information

Item Value
gene id G370402
gene name LOC101064074
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14434249 ~ 14437006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU420973
TGTGTATACATTTATTGTAACAAAGCAACTGGTACACTTAAAATGTTAATGTGAACAGTTTTCCAGTGGAAAAGGTGGAGATCACTAGTATATCCTATGAGATTCTATAGGGTCTCTACGTTCTCTTAAATAACCTGTTAATTAGCCAAGTTCAAAATTACAAGAGGACATTTTTTGGGTTTTGTTTTTATTAAAAATGTCATTTTCAAACCTCATGGGTGTCTGTAAAACATTACAATGAAAAGTCAATCAACATAAACCCAAATGTTGAGGTGTCAAAATGCCCACTTACCCCACCAAACCCCATTTAACTGTCTACAATAATAACCGTGTCATACCAAGATATCAACCCCAAAACATTTACAATCGCTGACAGGAACAAGCTGGTGCTTTCCGTTAGTACAACGCATGACGAAGAAAATGTGTCAACTCCAGaagaccccccccacccccatactCTGCATCAaagaaaatgtataaaataaaataaaacgtgGCCAGGGATGCTAAGTTATCACTGCACCATTGCTTATCTTTATTCAACTCACAAGTTAACAGAAACCTTATTTATCATACATATAAATTGCTATTCGACTTTATTTTAGTCTAAGATGACGTGCAGAATGCCTGTACTTTTATTGGTCTTCATGGACATGTGTAGTAGTTTTATGACACGCGAGACGGCAGAGTTTTCTGATCTGGGAATTTACTCGTCTTCAGACATGGTATGGACAGGCGGAAGCTtgtggaacaggagacagagcacaaaataatacaaaaataaaatgaaaacaaaGCTTCTTGCTCCCAAGCATTGAAGGATGATTAGAAGGAAAGAATGGGCAAAGGTATAGGTCGGAATATGTCCTTTTCTGCCTTAATCATCCTCGCCGTCATCCtctccttcctcatcgtcatcttcctctccttcatcctcATCCCCTTCCTCATCGATGTCCTCCAagccctcttcctcatcttcctcaccTTCCCCTTCCTCATCATCCATGTCAGGGACCTTGACGAGTTGAGATGTTATATGAATAAGAGTTCCCAAACATAATGCCAGCATGAGACGATTTACAGTCCAGAATCTAGGAATCCAGAAGAGATGTCTAGGTAGCTGGATATGGTTTTGTAATGCTCCGTAGAACCCTATGGTTATACAACACACGTCTGAAAGTGTCCCCGGAACAGCCTTTAGAAAAATCTCGCAGATTTCATTTTTTACAGAGACACTTTGGTCTGACCCTATGGCCGTAATGCCAAGATATTTTGGATAATTGTAAGAAACATGCAGAATACTCTACCAGAGTAAGAGGGTGCTGGCACCAATTCAAAAATGTTTAGCACACCATGGGCAGTCAACAAAGAACTATGGACAATAGCATGGAATCGTACCAGGTAATACTGCAATGGGTTTGGCCAGATGTCATCCTTAACGACCTCTCCTAGTTCGTCTGCCCCAGCGTCAGAGTGATCTGTGAACCAGGTGAAGAAGCTCTCTGGTTCTTCATGTTGCCTCTTCTTGCCAGCCTTGTTCGGCGTTTGGCCGGCACGCTTTGTCAGGTCCTGTGAGGGGATAAATGACTTTCCAGCCTTCCATTTGATTTCAGTTGACTTTGAAGATGGGTCCCCACTTTCATTCAAGTGAAACTCTTTGGAGAGGATTTTGTTCTCAAAGTACGGGTTCTCATCAAAGTACTGGAAAAAAACAATCTGGTTAATTTACGCGCCATTTAGTTTGAAATGCACGATCCAAAAAAAGATGTAAATACTTACAAAATCTATTCTGTAACCCGACTTGATGTCCTCAAACTCAGTCACCTCCACTCTGGTAAGGTAATGAAgtgcctcctcatcctcttcaccAAGAAGGGCTGAAACTGAAAACAAGAACACATTTACATAGAAAGTGTGTCACCGAACAGTTTGTATATCAACCGCTTAAATCAGACTGATGGAAACATTTGTCACGTGCAGAATCCCACCATGTACAATAAGTGTACAATTCCTAAAGAAAAGAACACAAACTAGTTAAAAATGAGCATGATATCTGAACTTACCTTGTGGGTGGTTAACAAATGTAGTGACCCAGAAGTTGGGGATTTTAGCTATGAGGTCTGACCGCTTCTGGAAGAATGGCTGGCGTAACTTATTGTACTTCTGCTCTACTTTTAAAATCTCCTCACTGGCCTGTTCATTCAATCTAGAGGGAAGAGAATTGTGCAACACAATTTGATGAGATGTATATGGTAAAAGGTCCATCTTATAAACCACAAAAGTTCCAGGATAATTAACTCACCTGTCAATTTCATTTTGTACTTCGTCAATGTGTTCAATAGCTTCTTGTTGCTCTTTTTCTGAAAGAGATTAAATTCGTGTTAATtttattgaaataaattaatgaaATTGGATGGGCATGTACATGTAAAACATCTTgatggtaaaaataaagacatggtaaagaccCAACCAACGTAAA

Function

NR:

description
protein SET-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU420973 True 2485 lncRNA 0.40 3 14434249 14437006

Neighbor

gene id symbol gene type direction distance location
LOC110523261 sptan1 coding upstream 4781 14376959 ~ 14429468 (+)
LOC118964781 NA coding upstream 37304 14396810 ~ 14396945 (+)
LOC110523259 odf2 coding upstream 66709 14351453 ~ 14367540 (+)
LOC110523258 LOC106570496 coding upstream 86837 14345633 ~ 14347412 (+)
mmp11b LOC106570480 coding upstream 125530 14272305 ~ 14308719 (+)
uap1l1 uap1l1 coding downstream 1110 14438116 ~ 14447360 (+)
LOC110523268 LOC106570653 coding downstream 108563 14545569 ~ 14547879 (+)
fam102ab LOC106569988 coding downstream 110937 14547943 ~ 14630069 (+)
LOC110523269 LOC106569993 coding downstream 205767 14642773 ~ 14672009 (+)
dpm2 NA coding downstream 241114 14678120 ~ 14684431 (+)
G370413 NA non-coding upstream 542 14433432 ~ 14433707 (+)
G370406 wdr34 non-coding upstream 1342 14432649 ~ 14432907 (+)
G370476 NA non-coding upstream 1860 14432027 ~ 14432389 (+)
G370407 wdr34 non-coding upstream 3180 14430847 ~ 14431069 (+)
G370472 NA non-coding upstream 32102 14401839 ~ 14402147 (+)
G370516 NA non-coding downstream 89277 14526283 ~ 14526559 (+)
G370520 NA non-coding downstream 92258 14529264 ~ 14529588 (+)
G370522 NA non-coding downstream 93567 14530573 ~ 14530923 (+)
G370524 NA non-coding downstream 95959 14532965 ~ 14534995 (+)
G370414 NA other upstream 66088 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 108354 14321104 ~ 14325895 (+)
G370360 NA other upstream 175116 14255803 ~ 14259133 (+)
G369763 NA other upstream 664953 13765247 ~ 13769296 (+)
G368440 NA other upstream 1325115 13108696 ~ 13109134 (+)
LOC118964542 LOC106569496 other downstream 367655 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 611172 15047739 ~ 15054353 (+)
G371182 NA other downstream 687284 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 1354553 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1782600 16218328 ~ 16220933 (+)

Expression


Co-expression Network