G370524


Basic Information

Item Value
gene id G370524
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14532965 ~ 14534995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU421096
TTGCTATAGCATACTCCTCCTCAGCCCCTCTTTAGTTTTATGTatactacccttcaaaagtttggggtcacttagaaaatgtccttgttttttaaagaaaagcacatttttggtcaattaaaataacattgaaTGAATTAATATCTGCAATGTATttctgttaatgttgtaaatgactattgtagctggaaacggcagattttttatggaatatctacataggcatacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgtgttagcttatccaagtttataattttaaaaggctaattgatcattagaaaacccttttacaattatgttagcacagctgaaaactgttgttctgattaaagaagcaataaaacggtcctttagactagttgagtatctggagcatcagcatttgtgggttcaattacaggctcaagtACATTGGTGTATCTAGTTGAGAAACAaaatgcctcacaagtcctcaattggcagtTTCATttaatagtacccacaaaacaccagtcttaacgtcaacagtgaagaggcgactccgggatgctggccttctcggtagagttcctctgtccagtgtctgtgttcttttgcccatcttaatattttatttttattggccagtctgaAAGTCCTGAAATTTGCATAACATTTTACAAATTTGTAAGCGCTCAAGATCCCGGACTGCATCTTTAAGGGACATGCACTGTATAAGAACAACTGAGTGGGAACCTACGGAAATTGAAAATTCACATTTTCACAACATTCCATATTAGACACTAATCTTAAATCAAAGACATCTGTTATAGGACTTTATGGGCTAGAAAACTCATATTTCCCACCAACtcaaaaaataacatttaaaaccaCTTAACCAGGGAGTCAACATAAACTGTTTATCCTGTCACAGTGCTAAATAGCTTGCTTGAACTCACTGCTTTTCACCTACTACATCACAATAAGTCATTGATTTACTCTATATCGAGATATGAACCCTCACACTTACCATAAGCTCGAGCTCAGTGCGATGAACCCCCAGTTTCTTGAGCCCAATGGACAGGTCGTTGACGCAGATGCCCCCATCACCATTCACGTCCAGGACTTGAAACAGCACTTTTAGTCTATGGTCCTGCTCGGGTCCACCACAAAGTTCGCATGGGTATGATGGCTCACAGGAGTCATCACAGGAACCTGTGATTTCTACTGACAACGGACGCTCCCGAGTTAGAAGTGAGGCTGTGAAAGATGATGAGGATGCGCCCCCAGCACCCCCGACCCCTCCACCCGGGTCAGAAGAATCCTCTGTTCGGCATTGACAAAAGACCCCGCTGAGTAAGGGTGACACAAAAGTCCCTTGCTGGTGCATCATACGGATGGAACCAATAATGTCAAACTACTACAATCAATGACGATATTTTACAATATCGAAATTTAAGGTGACGTGTGGTAGCTTTGCTAGCCGTCTATTTTCGCCACCATGTCACGTGCGTTATAACCCCACATTGTTAAGGATTGCTAAAGTAGTAACTACAGACAAAAAGTCAAATGTTGTAGACTTTGCAATGTAACTTTCTTATTTCACTGTTATGCCTGTTTAGTCCAAAACGGTTGACTTATTATCTGCTAACTCTGTTTGGTTTACTAGCAACTGACAtattagccagctaacgttagctacagcTGAGAAACGAGGAGGTGGATGCTGAGCCGCACGCGGATTGGAATGTAACGTTAGACAAGTTTCAGTGTCACGAAAATCACTACAGAGATACCTTCTACTGGTCGTGAAGAGGTCCACTTTCCTGTCTTGACTAAGGCGCCGGCGAAATCCTCCCGTTTGAATT

Function

NR:

description
calcium-binding mitochondrial carrier protein SCaMC-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421096 True 1873 lncRNA 0.41 2 14532965 14534995

Neighbor

gene id symbol gene type direction distance location
uap1l1 uap1l1 coding upstream 85605 14438116 ~ 14447360 (+)
LOC110523261 sptan1 coding upstream 103497 14376959 ~ 14429468 (+)
LOC118964781 NA coding upstream 136020 14396810 ~ 14396945 (+)
LOC110523259 odf2 coding upstream 165425 14351453 ~ 14367540 (+)
LOC110523258 LOC106570496 coding upstream 185553 14345633 ~ 14347412 (+)
LOC110523268 LOC106570653 coding downstream 10574 14545569 ~ 14547879 (+)
fam102ab LOC106569988 coding downstream 12948 14547943 ~ 14630069 (+)
LOC110523269 LOC106569993 coding downstream 107778 14642773 ~ 14672009 (+)
dpm2 NA coding downstream 143125 14678120 ~ 14684431 (+)
pip5kl1 LOC106570018 coding downstream 149599 14684594 ~ 14693573 (+)
G370522 NA non-coding upstream 2042 14530573 ~ 14530923 (+)
G370520 NA non-coding upstream 3377 14529264 ~ 14529588 (+)
G370516 NA non-coding upstream 6406 14526283 ~ 14526559 (+)
G370402 LOC101064074 non-coding upstream 95959 14434249 ~ 14437006 (+)
G370413 NA non-coding upstream 99258 14433432 ~ 14433707 (+)
G370575 NA non-coding downstream 106525 14641520 ~ 14641856 (+)
G370539 NA non-coding downstream 141117 14676112 ~ 14677187 (+)
G370414 NA other upstream 164804 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 207070 14321104 ~ 14325895 (+)
G370360 NA other upstream 273832 14255803 ~ 14259133 (+)
G369763 NA other upstream 763669 13765247 ~ 13769296 (+)
G368440 NA other upstream 1423831 13108696 ~ 13109134 (+)
LOC118964542 LOC106569496 other downstream 269666 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 513183 15047739 ~ 15054353 (+)
G371182 NA other downstream 589295 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 1256564 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1684611 16218328 ~ 16220933 (+)

Expression


Co-expression Network