G371043


Basic Information

Item Value
gene id G371043
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14925970 ~ 14929255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU421684
TTCAAAGGAGAGGGAAGCCTCACTTTGGAGGAAAGTGAGCTGAATTCATCTTTAAAATGTAATAACTACATACATAACTGCCCTTTTTGCAAGGTTACCAATGGGTGTTTTGAGTCCAGCTCTGTTCTGAAAAGGCCTCAGTCTTGGATTTGTTAGTAAAGGCTAGTCCCCAGCTCTAAAAGGCTGGAGCAACGCTCACAGAGTAAGAGTGCATCAGAGAAGAACAAGCAATCCCAGAGCAGAGGCTCGCTGGTCGAGACTTGGGTGGTTGAATACAGACCTACTTTAATGTTGAAGTATTATTCTCTGACATGTTCCAAACTTTTTGAAACATTTGAAAACTGCAAACAGGTACCCCCCAGGTCATTCCTTAAACGGGCTGTTATGATTGATGTGGTTGAGCTATCTTAACACACTGTTTTGAGAGTACCATAGGACTATCTCAGGGCTTCACTGGAGAGCTCATTGATTCACAGCTTTAATGTGGCACAGATTTGAAGGGGTAAATATGGAAACAGTTAGCGCTGACTGAATCGGAGAAGAAAATTGAGATTCTGATAATAGAACAGGATAATATATTTCAGAATATATTGTTGTGTATATAATTGCTGTCACTCTTTAAAAGCCATAAAGCGTCATAAAGAATCATGTAAGCCTCTTTCAGTTCAGCTGAGGCAGTGGTTACATGCTATTCTTCTGTATCACGTCTAACTCtataaatgtattgtttttacACTGAACTATTTGTATCTAACCAGATCTAATGCTCCAGCTTTTTATCCTTTTCCATAGTCCTCCCCAACAAATTAAAAATCTGTTTTTATCCTGACCTGTACTTGTACTGACCTTCAACACAGTGGGAACACTGTCACTTCCCTTAATCACAAGATTAGGCATTCCCCCCTAAAAAGCACATAGAGATTTCAAACTTCTAtttcacaacccccccccccccccccccccccccccccccccccccccccccccccccccctccagtatGTCGCCATGGAGGAAACCGGTGGAGGGTGAGGTCAGCAAAGTGTTTACGGAGCAGTGGAACTAGGAAGTGTGAACATTTTTATTTGAATAGTCAATCTGTATATGTTCTACAGACTAAGTTACATTTCAGCTAACTATCTGCTAGCCCTAACCAATTACAttatattttagtaatttagcagaggctcttatccagatcTACATACAGGAGCAAATAGGGTTAATAgccttactcaagggcacatcaacagatttttcacctagtctgcttggggattcaaaccagcgactggtccaacgctcttaactgctaggctacctgccgccctaaccttaacccttaacttagacctaaccctaactgtaaccttcgcaagcagttgcttatcaacaaaGTGTGACCGGAAGTGTGTTTGACCCACAGAAAAGGCTTCCCCCGATCAAGTCACTGTAGGAACGGTTTCTGTTCGGCTCAAGGTACATGTTGCATGGTCTAGGGTCAGATTGCAGTACCCTCATTATGAGCTTAGTCATTAGGAAATTAAATAATATCTGATCCTGTGGTTGGAGACAACTTCTATTGTACATCTGTATAGGACTGTGCCAGTATGTTCGGTACTGTAGGTAGTCATGCCATGGTCACAACAGTTGACCGCAAGGGTAGCAGGTAGCCAAGCGGttgagcattgggccagtaactggaaggtcactggtttgaagacctgagccgacaaggtgaaaaatctgtctgtgcccttgagcgagGCACTTAACCCTAGAGTGCTCCAGAGGCACCAtattactatggctgaccctgtaaaacaacacctttcACTGCACACATCCTATCTTTATTTTATCATCCCATCAGCAATGTGACTGTTGTGAATGTTATTTTCCATGTATGCATCCCAACATTCCTTTTATTTAATGTGTTTTTTGCAGAGTTactgaatgtttgttttcatAAGCAACATTCAAGTTCTCAGACTGGTCAGAAATGGTGTTCAGTGCTCGAGCTATGCAACGCTTGCCTTATTTCAACAGTCCTCCTGTGCATCCAGTGTGGGTGGAGCGCCCTCCTGCGGGAGGTCTGAGTAACAGAGGAAAGTGTTCACTGTCCTtttctccatttgttttgtaatgtaaaataaaaaatgctgtAAGGTTGTGTGTATTACCATCAAAATATTAGAATTTTCTGACTCTTAATGGCCAGTCATTTAACCACATTGTGTATCATTTGGGTAGCATACCAAAACTGTCGAAGCAGCATTGATGCTTCTCATTATGTATTTGACCTGTTTTGGGGAATCGTTTCTAGGTTAACTCTTATTGCATATGCATAATTAGGCAAACAACCTACTTTTTAATAGGGGGTTCATGATACTACACTATATTGTTTATGATAGAGTTAAAAAGTTGGTCTAAAAAACACAGCCTATGGAAACAGTTCAGGGAGTCCGAGAAAGGCTTCTTATTACATATTGTACTTGGCTTAGTTGATGATAACATAGCCAAGTTATCACCTAACTAATGCCATCTTTATTCATTGTGTATTCATTCATCGTGTTATTTTTCCCTCTGCGATGTTATGAAGggtcgtaagtaagcatttcactgttagtctacacctgttttacgaagcatgtgactaatacaatttagTTTTGTGATATCTCCGTAGCATTAACAATTGGCACGGCCATGGCATGCTCTCTCAATATTGGGTAGGGCTATGGAAATGCACATTGTCTGTCAAACAATGCTTTTTATTTCTTGTAAGCCATACTTTGGGTggtcaacaagacaatgatacaTATTTCTGTCAGCCAACTGAATGAGATCAGTTGGTACAAGCCTGTATCTAGCTATCTTTCTTTGATGTTTTGCTGGCAGGCATTGTAAGGGCCCTGATGTGTGCTGGCTTTTGTTCCTGTCAGGTTTTGGTTCCTTTCCATCTGCTTGGACAGTCTGGTCAACATCTCAACCCACACATTTTATGCCAGGTTCACATACTGTACGCCACCCACATTGGGTGGCACTATAATGTTGCTCTTGTTTCATTTAAGTGTAAAAACATGGACCTGTCAAAAGTTAATGGGCAAATGACAATCTGTATCTCTTCTACATCAGTGTTGCCCATGTAATGATAGGTTTTCACTTCGTTGCCAAAATGAGTAAACACTGGCTTTCTTAGTGGAGAAATGATGAATGCCCCAGACTCTTGTAACAATGGAATAATAGAGCCTTGACAACACCACAACAGTTGCTTTACTGtgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421684 True 3286 lncRNA 0.42 1 14925970 14929255

Neighbor

gene id symbol gene type direction distance location
phyhd1 phyhd1 coding downstream 430 14914865 ~ 14925540 (-)
nup188 nup188 coding downstream 14379 14891979 ~ 14911591 (-)
LOC110523275 NA coding downstream 156810 14766176 ~ 14769160 (-)
slc25a25b LOC106570619 coding downstream 390848 14487750 ~ 14535122 (-)
pkn3 pkn3 coding downstream 445550 14460818 ~ 14480420 (-)
LOC110523281 lrrc8a coding upstream 1613 14930868 ~ 14959152 (-)
LOC110523283 LOC106569957 coding upstream 43994 14973249 ~ 14986191 (-)
LOC110524957 LOC106569957 coding upstream 58892 14988147 ~ 14995197 (-)
LOC110523296 LOC106569911 coding upstream 87501 15016756 ~ 15023815 (-)
LOC110516435 LOC106569911 coding upstream 107340 15036595 ~ 15043478 (-)
G371069 NA non-coding downstream 56921 14865745 ~ 14869049 (-)
G371060 NA non-coding downstream 74895 14850492 ~ 14851075 (-)
G371036 NA non-coding downstream 108333 14817393 ~ 14817637 (-)
G371035 NA non-coding downstream 109500 14816230 ~ 14816470 (-)
G371020 NA non-coding downstream 135055 14790310 ~ 14790915 (-)
G371108 NA non-coding upstream 36880 14966135 ~ 14966439 (-)
G371109 NA non-coding upstream 38567 14967822 ~ 14968150 (-)
G371110 NA non-coding upstream 41321 14970576 ~ 14970831 (-)
G371251 NA non-coding upstream 47065 14976320 ~ 14991459 (-)
G371258 NA non-coding upstream 62324 14991579 ~ 14991938 (-)
G370635 NA other downstream 497379 14427338 ~ 14428591 (-)
G370333 NA other downstream 717265 14207190 ~ 14208705 (-)
G368921 NA other downstream 2219878 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2789180 12134052 ~ 12136790 (-)
G365752 NA other downstream 5735872 9189669 ~ 9190098 (-)
G371294 LOC106569911 other upstream 194220 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 766837 15693396 ~ 15707607 (-)
G372122 NA other upstream 1046351 15975606 ~ 15976116 (-)
G372123 NA other upstream 1049247 15978502 ~ 15981215 (-)

Expression


Co-expression Network