G370841


Basic Information

Item Value
gene id G370841
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14925971 ~ 14930826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU421456
gcaCAGTAAAGCAACTGTTGTGGTGTTGTCAAGGCTCTATTATTCCATTGTTACAAGAGTCTGGGGCATTCATCATTTCTCCACTAAGAAAGCCAGTGTTTACTCATTTTGGCAACGAAGTGAAAACCTATCATTACATGGGCAACACTGATGTAGAAGAGATACAGATTGTCATTTGCCCATTAACTTTTGACAGGTCCATGTTTTTACACTTAAATGAAACAAGAGCAACATTATAGTGCCACCCAATGTGGGTGGCGTACAGTATGTGAACCTGGCATAAAATGTGTGGGTTGAGATGTTGACCAGACTGTCCAAGCAGATGGAAAGGAACCAAAACCTGACAGGAACAAAAGCCAGCACACATCAGGGCCCTTACAATGCCTGCCAGCAAAACATCAAAGAAAGATAGCTAGATACAGGCTTGTACCAACTGATCTCATTCAGTTGGCTGACAGAAATAtgtatcattgtcttgttgaccACCCAAAGTATGGCTTACAAGAAATAAAAAGCATTGTTTGACAGACAATGTGCATTTCCATAGCCCTACCCAATATTGAGAGAGCATGCCATGGCCGTGCCAATTGTTAATGCTACGGAGATATCACAAAActaaattgtattagtcacatgcttcgtaaaacaggtgtagactaacagtgaaatgcttacttacgaccCTTCATAACATCGCAGAGGGAAAAATAACACGATGAATGAATACACAATGAATAAAGATGGCATTAGTTAGGTGATAACTTGGCTATGTTATCATCAACTAAGCCAAGTACAATATGTAATAAGAAGCCTTTCTCGGACTCCCTGAACTGTTTCCATAGGCTGTGTTTTTTAGACCAACTTTTTAACTCTATCATAAACAATATAGTGTAGTATCATGAACCCCCTATTAAAAAGTAGGTTGTTTGCCTAATTATGCATATGCAATAAGAGTTAACCTAGAAACGATTCCCCAAAACAGGTCAAATACATAATGAGAAGCATCAATGCTGCTTCGACAGTTTTGGTATGCTACCCAAATGATACACAATGTGGTTAAATGACTGGCCATTAAGAGTCAGAAAATTCTAATATTTTGATGGTAATACACACAACCTTacagcattttttattttacattacaaaacaaatggagaaaAGGACAGTGAACACTTTCCTCTGTTACTCAGACCTCCCGCAGGAGGGCGCTCCACCCACACTGGATGCACAGGAGGACTGTTGAAATAAGGCAAGCGTTGCATAGCTCGAGCACTGAACACCATTTCTGACCAGTCTGAGAACTTGAATGTTGCTTatgaaaacaaacattcagtAACTCTGCAAAAAACACATTAAATAAAAGGAATGTTGGGATGCATACATGGAAAATAACATTCACAACAGTCACATTGCTGATGGGATGATAAAATAAAGATAGGATGTGTGCAGTgaaaggtgttgttttacagggtcagccatagtaataTGGTGCCTCTGGAGCACTCTAGGGTTAAGTGCctcgctcaagggcacagacagatttttcaccttgtcggctcaggtcttcaaaccagtgaccttccagttactggcccaatgctcaaCCGCTTGGCTACCTGCTACCCTTGCGGTCAACTGTTGTGACCATGGCATGACTACCTACAGTACCGAACATACTGGCACAGTCCTATACAGATGTACAATAGAAGTTGTCTCCAACCACAGGATCAGATATTATTTAATTTCCTAATGACTAAGCTCATAATGAGGGTACTGCAATCTGACCCTAGACCATGCAACATGTACCTTGAGCCGAACAGAAACCGTTCCTACAGTGACTTGATCGGGGGAAGCCTTTTCTGTGGGTCAAACACACTTCCGGTCACACtttgttgataagcaactgcttgcgaaggttacagttagggttaggtctaagttaagggttaaggttagggcggcaggtagcctagcagttaagagcgttggaccagtcgctggtttgaatccccaagcagactaggtgaaaaatctgttgatgtgcccttgagtaaggcTATTAACCCTATTTGCTCCTGTATGTAgatctggataagagcctctgctaaattactaaaatataaTGTAATTGGTTAGGGCTAGCAGATAGTTAGCTGAAATGTAACTTAGTCTGTAGAACATATACAGATTGACTATTCAAATAAAAATGTTCACACTTCCTAGTTCCACTGCTCCGTAAACACTTTGCTGACCTCACCCTCCACCGGTTTCCTCCATGGCGACatactggaggggggggggggggggggggggggggggggggggggggggggggggggggggttgtgaaaTAGAAGTTTGAAATCTCTATGTGCTTTTTAGGGGGGAATGCCTAATCTTGTGATTAAGGGAAGTGACAGTGTTCCCACTGTGTTGAAGGTCAGTACAAGTACAGGTCAGGATAAAAACAGATTTTTAATTTGTTGGGGAGGACTATGGAAAAGGATAAAAAGCTGGAGCATTAGATCTGGTTAGATACAAATAGTTCAGTgtaaaaacaatacatttataGAGTTAGACGTGATACAGAAGAATAGCATGTAACCACTGCCTCAGCTGAACTGAAAGAGGCTTACATGATTCTTTATGACGCTTTATGGCTTTTAAAGAGTGACAGCAATTATATACACAACAATATATTCTGAAATATATTATCCTGTTCTATTATCAGAATCTCAATTTTCTTCTCCGATTCAGTCAGCGCTAACTGTTTCCATATTTACCCCTTCAAATCTGTGCCACATTAAAGCTGTGAATCAATGAGCTCTCCAGTGAAGCCCTGAGATAGTCCTATGGTACTCTCAAAACAGTGTGTTAAGATAGCTCAACCACATCAATCATAACAGCCCGTTTAAGGAATGACCTGGGGGGTACCTGTTTGCAGTTTTCAAATGTTTCAAAAAGTTTGGAACATGTCAGAGAATAATACTTCAACATTAAAGTAGGTCTGTATTCAACCACCCAAGTCTCGACCAGCGAGCCTCTGCTCTGGGATTGCTTGTTCTTCTCTGATGCACTCTTACTCTGTGAGCGTTGCTCCAGCCTTTTAGAGCTGGGGACTAGCCTTTACTAACAAATCCAAGACTGAGGCCTTTTCAGAACAGAGCTGGACTCAAAACACCCATTGGTAACCTTGCAAAAAGGGCAGTTATGTATGTAGTTATTACATTTTAAAGATGAATTCAGCTCACTTTCCTCCAAAGTGAGGCTTCCCTCTCCTTTGAAAATAACTTGGAACAGCtggtaaaaataataataccaTGTAAATTCTTGAAACATAAATGTAAAACATTATAAGCTATACATTTGTCTGCATATTTAGCAAAATCATGAACATGATGGTTGTAATGACACAGCGTGGGACATACATTACAGCACCAGAAAGGGAAGGCCATATTAGTAACAAGAGTTGCCTGGCTGGTCTTAAAGGAATCACCTTTGGTGGCAATTGACCTCTAATGTTGTCTACTCCAAGTCCATTCAATAAAAAAGTATCTCTTCGATATTCATGCAGAATATACCTCACAAATGTGTTCTGTATAAGCCAATGATGTATCCACGGTCACTGTTTTGGAGTGCAAATATCTGGGTTGTTTTCATTAGGGCACACGGTAACAAACATTTTTAAATGTGTTGCAGAAAACAACAATTTGTGTTATTTTTGGACAAGTCCAGGTCGTTTCAGTCCATTTCCCACTATTTGGTGCCTAATAAAACAGGGCCCTGCTTTGGTTCCATCGGCCATAGTGTTTCATTCACCAGTCAGATCCTGCGTCCTCTCACTGGCGTTTGGATAAACAGCCTAGTGGACTGTATACTTCCAAGTGAAGATGGaaaacagagcacacacacatatattgcTTTGTAGGCTACATGAACCATCCACACCAACTCTTTTATGTAGTCCTTCTGTGGCCACTGTCTATACCAGAAATGTCAAAACATACCTGTCAGTtgtttgagaaaaaaaaatatatataaatattggtTTTTCTTTTGGTGGGGAAACATACTCAATATagtttaaaatgactaaaaccaaatggaaacggtgtagaaatgataatggaaGCTAGACAGTCCGGGAGGATTGACCTCAAAGACCAAATGCAGCCCCCAGAGCAAAATGAGTTTGACAACCTTGACCCATACTGAGATGACTccgtacaaacaaacaaacaaacaaaatcctCAATCTCACAAGCATTTCATTtctgtctctcatcctctcctaaTCAGCATTCGACAACGATCGACTTTGCACATCATTTCATAAAAGAAAAAGGGAGAAAAGAACCAAAGTTGGAGAGGAGAGGTCTCCATCTGGTTAGTCTGTTAATAAACATCTTGTGACCCTGTGACTAGGGATGTGatggtcatggaattttggataaTGGTAATTGGGCAACCAAATTACCGCGGTCACCATAATAAATGTTTGTATAgcaaaaaatgtataatttttttgGTAGATttacattttctcctctcctccagactgcatgtgctgccatagaaatataatgaatagaacaggcATCCCAATTCAAGTAAAttatggcataatgggtggagTGGTGGCTATTGACAGTGTACCCATAGTTTAAAAGCAGGAAGTAATTTGTGCTGCGATTTGATTCAATCAACTCacattacaaaaaaatacattgcaTGAGCTACATTAgttaacattctacattaccatggaaattaCATCACAATATCAGGCAGCCATTGCAAGTGTATCTACAAATTTACCAGTCAAATTACCAAGATTAGATTTTCCTAGactgttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421456 True 4856 lncRNA 0.40 1 14925971 14930826

Neighbor

gene id symbol gene type direction distance location
dolk dolk coding upstream 9293 14901565 ~ 14916678 (+)
cdk5rap2 LOC106570081 coding upstream 33777 14819309 ~ 14892194 (+)
LOC118964542 LOC106569496 coding upstream 120445 14798616 ~ 14805526 (+)
LOC110523276 NA coding upstream 133422 14785471 ~ 14793184 (+)
sh3glb2b sh3glb2 coding upstream 166204 14706795 ~ 14759767 (+)
dnlz dnlz coding downstream 64422 14995248 ~ 14999436 (+)
LOC110518391 LOC106596183 coding downstream 76964 15007790 ~ 15014612 (+)
LOC110523290 LOC106596183 coding downstream 96977 15027803 ~ 15034589 (+)
LOC110519479 LOC106596183 coding downstream 116913 15047739 ~ 15054353 (+)
LOC110518158 LOC106596183 coding downstream 134801 15065627 ~ 15075700 (+)
G370913 NA non-coding upstream 108987 14816759 ~ 14816984 (+)
G370898 NA non-coding upstream 140722 14784948 ~ 14785249 (+)
G370844 lrrc8a non-coding downstream 92 14930918 ~ 14931459 (+)
G370852 NA non-coding downstream 9146 14939972 ~ 14940348 (+)
G370948 NA non-coding downstream 11865 14942691 ~ 14942915 (+)
G370951 NA non-coding downstream 16073 14946899 ~ 14947168 (+)
G370953 NA non-coding downstream 17706 14948532 ~ 14948785 (+)
G370414 NA other upstream 557810 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 600076 14321104 ~ 14325895 (+)
G370360 NA other upstream 666838 14255803 ~ 14259133 (+)
G369763 NA other upstream 1156675 13765247 ~ 13769296 (+)
G371182 NA other downstream 193464 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 860733 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1288780 16218328 ~ 16220933 (+)
G372373 NA other downstream 1804816 16735642 ~ 16738500 (+)

Expression


Co-expression Network