G370844 (lrrc8a)


Basic Information

Item Value
gene id G370844
gene name lrrc8a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14930918 ~ 14931459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU421459
ACGGTTATACTGTAATTGTGGCAGTCCTACCATTTACCCTAAAAAATACAAATTTAGCCAGGAGAGCCAAGacaacaaccaaccaaccatccTTCTCTGGATGCGTGTCCAGCAATACAGACACATCTCCCCCCTTTCTCCTACCCCATACTAGTGGAGGCTGGAAGGAGGGAGAAATTTGAGAATGGCCTCCAATTGAAAGTGACATCAGCCTCCACTGCCCAATCCTCTCTCccgctttcctcctctccttaggCTCCCTCTCTCTGGACTCTCTCAGACCAGCTCCTTGTCGGCCCTCCACAGCTGTTCTTTGACCTCTGTGGGCAGTGTCTTGAACaggtcctcctccaccaccaggccGCTCCTCTTCAACTGCCTGCACTCCCCCAGCTCCACGGGCAGGCACTCCAGACGGTTACCCCGCAGCTCCAGCTGGGTCAGGCCCGTCAGCTCGCCGAAGCGCGATGGTAGAGTATGCAGGCAGTTGTTGCCCAGGTTCAGGGTGCGCAGCTTCTTGCACTGGAACAGCTCCGGCGGGA

Function

symbol description
lrrc8a Enables cyclic-GMP-AMP transmembrane transporter activity; identical protein binding activity; and volume-sensitive anion channel activity. Contributes to anion channel activity. Involved in several processes, including anion transmembrane transport; cell volume homeostasis; and protein hexamerization. Located in cell surface and plasma membrane. Is integral component of lysosomal membrane and integral component of plasma membrane. Part of ion channel complex. Implicated in agammaglobulinemia and agammaglobulinemia 5.

NR:

description
volume-regulated anion channel subunit LRRC8A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421459 True 542 lncRNA 0.56 1 14930918 14931459

Neighbor

gene id symbol gene type direction distance location
dolk dolk coding upstream 14240 14901565 ~ 14916678 (+)
cdk5rap2 LOC106570081 coding upstream 38724 14819309 ~ 14892194 (+)
LOC118964542 LOC106569496 coding upstream 125392 14798616 ~ 14805526 (+)
LOC110523276 NA coding upstream 138369 14785471 ~ 14793184 (+)
sh3glb2b sh3glb2 coding upstream 171151 14706795 ~ 14759767 (+)
dnlz dnlz coding downstream 63789 14995248 ~ 14999436 (+)
LOC110518391 LOC106596183 coding downstream 76331 15007790 ~ 15014612 (+)
LOC110523290 LOC106596183 coding downstream 96344 15027803 ~ 15034589 (+)
LOC110519479 LOC106596183 coding downstream 116280 15047739 ~ 15054353 (+)
LOC110518158 LOC106596183 coding downstream 134168 15065627 ~ 15075700 (+)
G370841 NA non-coding upstream 92 14925971 ~ 14930826 (+)
G370913 NA non-coding upstream 113934 14816759 ~ 14816984 (+)
G370852 NA non-coding downstream 8513 14939972 ~ 14940348 (+)
G370948 NA non-coding downstream 11232 14942691 ~ 14942915 (+)
G370951 NA non-coding downstream 15440 14946899 ~ 14947168 (+)
G370953 NA non-coding downstream 17073 14948532 ~ 14948785 (+)
G370959 NA non-coding downstream 26393 14957852 ~ 14958072 (+)
G370414 NA other upstream 562757 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 605023 14321104 ~ 14325895 (+)
G370360 NA other upstream 671785 14255803 ~ 14259133 (+)
G369763 NA other upstream 1161622 13765247 ~ 13769296 (+)
G371182 NA other downstream 192831 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 860100 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1288147 16218328 ~ 16220933 (+)
G372373 NA other downstream 1804183 16735642 ~ 16738500 (+)

Expression


Co-expression Network