G371271


Basic Information

Item Value
gene id G371271
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15051764 ~ 15096656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU421959
CACACATACAATACATCAGAAAGCTTTAAGGGACTTGTTCAACTTATTCATTGTTGAGAAGTTAAAATGTCAGTGCCATTTGTGTTGGAATCTTCAGTTGACAGCAGCGGTGTTGAAATCTTCTTGGATGGTGCAATAAGTGATAAACTGTGCATTGTTATTCTGTAACAGGACATGAACATGGTTAGAATACAGTGCGATAATGACTGCATTTAcaaaggcagcccaattctgatatttttcccgtctgtctgtgtgtgcgcatgcCTTTACCACATTGATAGAGTTTGTTAAGGCGTGTTATGTCCAGGGGGCTCAGGTGATTTCTCTGTCCAATCTGGACTCCACTCTTCGTGGCGTCAATAGTGGGGTTCCGGTTTGATGAGAAGTAGTATCTGCCAGGAGAAACCCAACAATGGGGGATTAGAGGACTTGCTACTTTAACACAAGAACTGCGTCacaatgccaccctattcccaataGTGCACAtagtttgaccagagcccaggtAAAAAAAAGTGTGACGTAAAGAGGGAACCATTTGGTACGCACAGGGAAATGTTACTGGAGCTGGATACCGTACAGTCACAGTAAAACTAATATTTACTCATTGCTAGCAGTTTAAAAACAAGTTGAGTAAAATTAGGACTTTAGTGGGAATAAGGAGGAGAGTAGTGTGACTGACGTTCCATAGTGCATTATGGAGTCGTAGTCATAGGGCAGGTCCTGAGTGTCTCCTTTCTTCACCTTAAAGTTCTCTTGTTTTCCTGGAAGTTAAAAGAGTTACAAGAAGCAGATGTGACTGGTGGACACTGCTGGGTGTGAATGTGATATAGGTGAATGAAAATGGAAATGTATACAAGTTGAGATGGAAAAACCATTAAGTTGAACCTCTAGCAGGAGGAAACTCTACATGATTCAAGGCATGAATATTTCATCTTACCTAATGAAACCCATTGCGGGTGGTAATGTAACAAAACTGCCCTCAAAACGAGCTTACATGTTATCCCAGGATACCCATTACGGGTGGCAACTGTAAAAGGTATATTTTACACCAGGATAGGTGGTAACTGTAGATGACAATGTAGAGTTATTCGCGTCAGGCAAATTTAGCGAACAAGGTTGCTGCAATCATGCCAGAAGAAATTCACAGGAGTTAACGAATTCAGTTCAATTCTACATAATTGCAAATTAGTCTATGAAATACATAGTATTGGTCTCAAACTGAAGAACACTGATGGTTACTGGTGTAAGATTCTCTGGTGTTTACATAACTGGTACTGTGAGATTAGGATATCAGGATTCAAGGTTGCTATGATATTAGGACATCGGGACCTGCTTAGACAAAGCAATTTCAACAGTAGAGGAAAGGGTTGCAATGTGTGGGGAAATAAATGGCTGCAGTATTTCCGTTATAATAAGTACATGATAAATGGAACATTAAGGCATAAATGTATGAAAGACTATTCTTATTTTAAACTAATGTTGTTCTGTCCTTGTGGTGCACTGTCTATTCATGTTATGTAGTGTTTCATGGTGTGTggagcccaggaagagtagctgctgcttatgtaacagtataactttagaccgtcccctcgcccataccagggaccctctgcacacatcaacaactgacacccacgaagcatcgttacccatcgctccacaaaagccacggcccttgcagagcaaggggaaccactacttcaaggtctcagagcaagtggcgtcaccgattgaaatgctatttagcgcacaccaccgctaactaagctagccgtttcacatccgttacacttagGCAGTACCTAATAAAATATTAAATGTCAATAGTTAGTTATTCTGTACGGTCTTCAGACCACAAAAAGCTGAATCAGGTATGTTAGTGTTGGGCTAGTACTAAAGCCTACACACTGCAGCTCTTCAGGGGACAAATTGACCAGCCCTGCCCCTGATCCACATGTAATGCCAGTGAGGTGGTTTAGTATGTTGTGTTGGTGTGAGTAACCTGGGACCACGTTGTCCCACTGTATGGTGACGTATTGGTCACGGTCTGGCCGTGTGTGCTCGTGGTGCAGGCCCAGGGCATGCATCAGCTCATGGCACAGGTTCCCCACGTTACAGGCTCTACCGAAGTACAGAGACTGGGCCCCGCCCTGAAAACCTACATACGACGCACAGCTAGAGTTAAGGGAAGAAAGAGAaaggtgagagaaggaggagagagaggggatatgacaggaagagagaaaaataaaggaTTGAACACAGGAAAAAGGAAGGAGAGGTTGTGAGTTAACTGTAAACTGCTGGGAAGGAGAGAATGTGTTAATGTGCCCACTTTGGACTCACCCTGTCCCAGAGATGATGTCTATGTAGTTAATCTCATTGGTGTATTCGTGGAAGAGGATACACGTCTGGTCTGAAATCTTGAACGCTGCTAGTATAGTTACCTTTCTGTCCACTGTGTGGATCAGAG

Function

NR:

description
low choriolytic enzyme-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU421959 True 2482 lncRNA 0.43 3 15051764 15096656

Neighbor

gene id symbol gene type direction distance location
LOC110516435 LOC106569911 coding downstream 8286 15036595 ~ 15043478 (-)
LOC110523296 LOC106569911 coding downstream 27949 15016756 ~ 15023815 (-)
LOC110524957 LOC106569957 coding downstream 56567 14988147 ~ 14995197 (-)
LOC110523283 LOC106569957 coding downstream 65573 14973249 ~ 14986191 (-)
LOC110523281 lrrc8a coding downstream 92612 14930868 ~ 14959152 (-)
LOC110523286 LOC106569911 coding upstream 2129 15098785 ~ 15117065 (-)
LOC110511258 dnlz coding upstream 23698 14996578 ~ 15121731 (-)
LOC118964741 LOC106569911 coding upstream 29106 15125762 ~ 15127293 (-)
LOC118936653 LOC106569911 coding upstream 30940 15124103 ~ 15129366 (-)
LOC118936652 LOC106569911 coding upstream 34852 15081830 ~ 15136742 (-)
G371268 NA non-coding downstream 2613 15008636 ~ 15049151 (-)
G371276 NA non-coding downstream 9076 15042204 ~ 15042688 (-)
G371258 NA non-coding downstream 59826 14991579 ~ 14991938 (-)
G371251 NA non-coding downstream 60305 14976320 ~ 14991459 (-)
G371110 NA non-coding downstream 80933 14970576 ~ 14970831 (-)
G371289 NA non-coding upstream 5679 15102335 ~ 15102656 (-)
G371286 NA non-coding upstream 23148 15119804 ~ 15140073 (-)
LOC110523287 LOC106569911 non-coding upstream 40179 15135601 ~ 15138027 (-)
G371285 NA non-coding upstream 51891 15148547 ~ 15149001 (-)
G370635 NA other downstream 623173 14427338 ~ 14428591 (-)
G370333 NA other downstream 843059 14207190 ~ 14208705 (-)
G368921 NA other downstream 2345672 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2914974 12134052 ~ 12136790 (-)
G371294 LOC106569911 other upstream 26819 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 599436 15693396 ~ 15707607 (-)
G372122 NA other upstream 878950 15975606 ~ 15976116 (-)
G372123 NA other upstream 881846 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1837579 16909582 ~ 16942359 (-)

Expression


Co-expression Network