G371988 (LOC106562870)


Basic Information

Item Value
gene id G371988
gene name LOC106562870
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15581704 ~ 15588109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU422790
TAATAGTCTGATCTACATTCAGCTCCACAGAGAATCCAGGAGGATTAATAGTCTGATCTACATTCAGCTCCACAGAGAATCCAGGAGGATTAATAGTCTGATCTACATTCAGCTCCACAGAGAATCcaggaggaataatagtctgaTCACAGTGAGTCAGTGTTTTTACTGTCTATCTGTTTAGCAGTTTTTTTTGGCAGTTTGTTTGGAGATGCTGATCtctaaactgtatttctgatcaatgacGTCTTGGTGGATCAACATTTCGTACTGTTTGTGTAACACACAATGCCTAATGATTATTCTgcaataaatacacacacacacacacacattgtgactGACCGATGCAGACACCCTCGTCGTCTAGTTCGGCGGACGCGTTTCTGAAGTATCCCAGTCTGCAGTGTTGGCAGTTCTGTCCTCTGGTATTGTGCTTGCAGCTGACGCACGTCACGATGTTCAGGTAGTCTATGTAGCTGCAGCGGTTAGAGTGGCCGTAGCACTCACAGtCTTTGAAATCATCGTATATGATCCCATACAACTGTCTGGCCTCAGGCTCTCCTCCTGAGATCAAGAGCTTGAGAATCCCTTTCTTTTTTGCAaactctccctcctcttcactctcttcctcctcccactttttcttcttcttctcctctctcccaggggGCTCTAAGGTCTCCTGACCCCAGATTTCCCATTCAGGGGG

Function

NR:

description
PREDICTED: netrin-G2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422790 True 712 lncRNA 0.46 4 15581704 15588109

Neighbor

gene id symbol gene type direction distance location
rapgef1b LOC106569917 coding downstream 356372 15149438 ~ 15225332 (-)
LOC110523287 LOC106569911 coding downstream 443677 15135601 ~ 15138027 (-)
LOC118964537 LOC106569911 coding downstream 446225 15134692 ~ 15135479 (-)
LOC118964536 LOC106596987 coding downstream 447199 15133867 ~ 15134505 (-)
LOC118936652 LOC106569911 coding downstream 448245 15081830 ~ 15136742 (-)
setx LOC106569805 coding upstream 22237 15610346 ~ 15679579 (-)
LOC110523302 NA coding upstream 105496 15693396 ~ 15707607 (-)
dolpp1 dolpp1 coding upstream 135680 15723789 ~ 15734869 (-)
miga2 miga2 coding upstream 151964 15740073 ~ 15752753 (-)
spout1 spout1 coding upstream 182796 15770905 ~ 15775789 (-)
G371986 NA non-coding downstream 299 15578091 ~ 15581405 (-)
G371935 NA non-coding downstream 114604 15461275 ~ 15467100 (-)
G371854 NA non-coding downstream 285729 15295648 ~ 15295975 (-)
G371849 NA non-coding downstream 298231 15282960 ~ 15283473 (-)
G371364 NA non-coding downstream 326902 15254177 ~ 15254802 (-)
G371994 NA non-coding upstream 5608 15593717 ~ 15595284 (-)
G371956 NA non-coding upstream 10128 15598237 ~ 15607633 (-)
G371954 NA non-coding upstream 15865 15603974 ~ 15607167 (-)
G372015 NA non-coding upstream 97789 15685898 ~ 15686111 (-)
G371294 LOC106569911 other downstream 456915 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 586545 14988147 ~ 14995197 (-)
G370635 NA other downstream 1153113 14427338 ~ 14428591 (-)
G370333 NA other downstream 1372999 14207190 ~ 14208705 (-)
G368921 NA other downstream 2875612 12705566 ~ 12706092 (-)
G372122 NA other upstream 387497 15975606 ~ 15976116 (-)
G372123 NA other upstream 390393 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1346126 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1535928 17124037 ~ 17125807 (-)

Expression


Co-expression Network