G371956


Basic Information

Item Value
gene id G371956
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15598237 ~ 15607633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU422757
atttctagtggttattgacccagtctgtactctctcttatggattctgcttatgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttatgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttatgttctgtttttacatttctagtggttattgacccagtctgtacactcttttatggattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttctgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttatgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttctgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactcttatggattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactctcttatggattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactctcttatggattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactctcttatggattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtactctcttatggattctgcttccgttctgttttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttccgttctgttttttacatttctagtggttattgacccagtctgtacactctcttatggattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactcttatagattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactctcttatggattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactctcttatggattctgcttccgttctgtttttacatttctagtggttattgacccagtctgtacactctcttatagattctgcttctgttctgtttttacatttctagtggttattgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422757 True 1383 lncRNA 0.37 4 15598237 15607633

Neighbor

gene id symbol gene type direction distance location
rapgef1b LOC106569917 coding downstream 372905 15149438 ~ 15225332 (-)
LOC110523287 LOC106569911 coding downstream 460210 15135601 ~ 15138027 (-)
LOC118964537 LOC106569911 coding downstream 462758 15134692 ~ 15135479 (-)
LOC118964536 LOC106596987 coding downstream 463732 15133867 ~ 15134505 (-)
LOC118936652 LOC106569911 coding downstream 464778 15081830 ~ 15136742 (-)
setx LOC106569805 coding upstream 2713 15610346 ~ 15679579 (-)
LOC110523302 NA coding upstream 85972 15693396 ~ 15707607 (-)
dolpp1 dolpp1 coding upstream 116156 15723789 ~ 15734869 (-)
miga2 miga2 coding upstream 132440 15740073 ~ 15752753 (-)
spout1 spout1 coding upstream 163272 15770905 ~ 15775789 (-)
G371994 NA non-coding downstream 2953 15593717 ~ 15595284 (-)
G371988 LOC106562870 non-coding downstream 10128 15581704 ~ 15588109 (-)
G371986 NA non-coding downstream 16832 15578091 ~ 15581405 (-)
G371935 NA non-coding downstream 131137 15461275 ~ 15467100 (-)
G371854 NA non-coding downstream 302262 15295648 ~ 15295975 (-)
G372015 NA non-coding upstream 78265 15685898 ~ 15686111 (-)
G372054 NA non-coding upstream 209207 15816840 ~ 15817633 (-)
G372056 NA non-coding upstream 211351 15818984 ~ 15819222 (-)
G372058 NA non-coding upstream 214052 15821685 ~ 15821906 (-)
G371294 LOC106569911 other downstream 473448 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 603078 14988147 ~ 14995197 (-)
G370635 NA other downstream 1169646 14427338 ~ 14428591 (-)
G370333 NA other downstream 1389532 14207190 ~ 14208705 (-)
G368921 NA other downstream 2892145 12705566 ~ 12706092 (-)
G372122 NA other upstream 367973 15975606 ~ 15976116 (-)
G372123 NA other upstream 370869 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1326602 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1516404 17124037 ~ 17125807 (-)

Expression


Co-expression Network