G371567 (LOC106569805)


Basic Information

Item Value
gene id G371567
gene name LOC106569805
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15650978 ~ 15651436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU422292
CAACCAGTAGTTTTTTGCATTTTTGGAATCGTAAAGATGCGGTTGCAGCAATGTCATCTTAGTCGTCGGATCATAGGACGTATCCATGTCTGGGAAGTTCTGGGGGATTCTCAGCTCGACAATGTAGAACATGCAGGTGAAGATGTCCTGAAGGTCATAAAAGTCGTCTCGGTCCACCTTACCTAACGACCTTGCAGCACCAATTGCCCACCGCTTACCGTCTCGTTGGGGTGGACGAGGAGGAGGTAGATCCC

Function

NR:

description
PREDICTED: probable helicase senataxin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422292 True 254 lncRNA 0.50 2 15650978 15651436

Neighbor

gene id symbol gene type direction distance location
LOC110523300 LOC105028392 coding upstream 59535 15464555 ~ 15591443 (+)
uck1 LOC106569943 coding upstream 505458 15117198 ~ 15187954 (+)
LOC110519478 LOC106596183 coding upstream 554221 15086878 ~ 15096757 (+)
LOC110518158 LOC106596183 coding upstream 575420 15065627 ~ 15075700 (+)
LOC110519479 LOC106596183 coding upstream 596625 15047739 ~ 15054353 (+)
st6galnac4 st6galnac4 coding downstream 98755 15750191 ~ 15756190 (+)
st6galnac6 sia7f coding downstream 104823 15756259 ~ 15772026 (+)
LOC110523312 surf1 coding downstream 137359 15788795 ~ 15791028 (+)
med22 med22 coding downstream 144741 15796177 ~ 15810502 (+)
usp20 LOC106569850 coding downstream 165364 15816800 ~ 15839459 (+)
G371544 NA non-coding upstream 35843 15614205 ~ 15615135 (+)
G371495 NA non-coding upstream 160715 15489608 ~ 15490263 (+)
G371489 NA non-coding upstream 165989 15478373 ~ 15484989 (+)
G371454 NA non-coding upstream 229398 15421280 ~ 15421580 (+)
G371453 NA non-coding upstream 231677 15418977 ~ 15419301 (+)
G371597 NA non-coding downstream 36790 15688226 ~ 15688447 (+)
G371598 NA non-coding downstream 38615 15690051 ~ 15698691 (+)
G371610 NA non-coding downstream 61534 15712970 ~ 15713201 (+)
G371612 NA non-coding downstream 62893 15714329 ~ 15714595 (+)
G371615 LOC100194725 non-coding downstream 140123 15791559 ~ 15795122 (+)
G371182 NA other upstream 522161 15124290 ~ 15128817 (+)
LOC118964542 LOC106569496 other upstream 845507 14798616 ~ 14805526 (+)
G370414 NA other upstream 1282817 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 1325083 14321104 ~ 14325895 (+)
G372281 LOC106569177 other downstream 568170 16218328 ~ 16220933 (+)
G372373 NA other downstream 1084206 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1218998 16870434 ~ 16882185 (+)
G373726 NA other downstream 2052677 17704113 ~ 17707757 (+)

Expression


Co-expression Network