G371661 (LOC106594099)


Basic Information

Item Value
gene id G371661
gene name LOC106594099
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15894375 ~ 15899296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU422407
TAACAGGATAGAGATGAATCTTGAGAAAGTCCCTTTGGAAAACTATGATCTATGTTGTTTGTTAAAAAAGGCCAGCCATCTCAACCCATTTTCTCACCTTCATAACCTGTCAATCACTTAGCAAACAAGTTGTTCTGGTCTTACCTGTATCTCAGTCCTCTCTGTTGCAGCTGACACTGTATCATGGCCTTTATGTTTATCCATCACCCAATGATAGCAGATGCACTGTTGATCGGTACGACAGTAAACCTCCAGCACTTTGTCATGATGAGAGCAGATCTTCTCCTGTAGTTGTGCGGTGGCTTTGACCAGCTTGTGTTTCTTTAGTCCAGGAACATCATAGTGAGGCTGgaggtgagtctcacagtaagacaccagacacaccagacaggacatgagggctttctgctttctggtcCCAGTGCAGAAATCACACGCCACATCTCCAGGTCCAACATAGCACAGAGCAGGGGGAGCAGCCTGGAGTCCTGTCTTCTTCAGTGTCTCCACCACCTCAGCCAACATGTTATTTTTCCTCAGAGTAGGCCTTGGAGTGAAGGTCTGATTGCACTGAGGACAACTGTAGATGCCCTGATCGTCCTGATCCCAGTAGCCCTCAATACAACTTCTACAGTAACTGTGTCCAAAGGGAATAGCCACCGGCTCCTTCAgtagatccagacagacagaacaacagaactggTCCTGGTCTAGTAGAACTCCCTGCTGAGCCATTTAGACTGTTGTTG
>TU422408
TAACAGGATAGAGATGAATCTTGAGAAAGTCCCTTTGGAAAACTATGATCTATGTTGTTTGTTAAAAAAGGCCAGCCATCTCAACCCATTTTCTCACCTTCATAACCTGTCAATCACTTAGCAAACAAGTTGTTCTGGTCTTACCTGTATCTCAGTCCTCTCTGTTGCAGCTGACACTGTATCATGGCCTTTATGTTTATCCATCACCCAATGATAGCAGATGCACTGTTGATCGGTACGACAGTAAACCTCCAGCACTTTGTCATGATGAGAGCAGATCTTCTCCTGTAGTTGTGCGGTGGCTTTGACCAGCTTGTGTTTCTTTAGTCCAGGAACATCATAGTGAGGCTGgaggtgagtctcacagtaagacaccagacacaccagacaggacatgagggctttctgctttctggtcCCAGTGCAGAAATCACACGCCACATCTCCAGGTCCAACATAGCACAGAGCAGGGGGAGCAGCCTGGAGTCCTGTCTTCTTCAGTGTCTCCACCACCTCAGCCAACATGTTATTTTTCCTCAGAGTAGGCCTTGGAGTGAAGGTCTGATTGCACTGAGGACAACTGTAGATGCCCTGATCGTCCTGATCCCAGTAGCCCTCAATACAACTTCTACAGTAACTGTGTCCAAAGGGAATAGCCACCGGCTCCTTCAgtagatccagacagacagaacaacagaactggTCCTGGTCTAGTAGAACTCCCTGCTGAGCCATTTAGACTGTTGTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422407 False 749 lncRNA 0.47 2 15894375 15899296
TU422408 True 749 lncRNA 0.47 2 15894375 15899296

Neighbor

gene id symbol gene type direction distance location
ptges ptges coding upstream 36015 15852569 ~ 15858360 (+)
usp20 LOC106569850 coding upstream 54916 15816800 ~ 15839459 (+)
LOC118964570 NA coding upstream 62634 15829533 ~ 15831741 (+)
med22 med22 coding upstream 83873 15796177 ~ 15810502 (+)
LOC110523312 surf1 coding upstream 103347 15788795 ~ 15791028 (+)
LOC110523326 dusp26 coding downstream 534967 16434263 ~ 16437732 (+)
LOC110523327 LOC105015301 coding downstream 555299 16454595 ~ 16470342 (+)
pargl LOC106569224 coding downstream 617504 16516800 ~ 16557705 (+)
LOC110523336 NA coding downstream 791609 16690905 ~ 16694551 (+)
polm LOC106569276 coding downstream 812886 16712182 ~ 16726009 (+)
G371653 NA non-coding upstream 24349 15869773 ~ 15870026 (+)
G371639 NA non-coding upstream 42654 15851370 ~ 15851721 (+)
G371632 NA non-coding upstream 78626 15815205 ~ 15815749 (+)
G371615 LOC100194725 non-coding upstream 100751 15791559 ~ 15795122 (+)
G371612 NA non-coding upstream 179780 15714329 ~ 15714595 (+)
G371672 NA non-coding downstream 27470 15926766 ~ 15939264 (+)
G371671 NA non-coding downstream 36012 15935308 ~ 15936996 (+)
G371682 NA non-coding downstream 42366 15941662 ~ 15945451 (+)
G371689 NA non-coding downstream 53306 15952602 ~ 15957635 (+)
G371706 NA non-coding downstream 90590 15989886 ~ 15992865 (+)
G371182 NA other upstream 765558 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 840819 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1088904 14798616 ~ 14805526 (+)
G370414 NA other upstream 1526214 14367672 ~ 14368161 (+)
G372281 LOC106569177 other downstream 320310 16218328 ~ 16220933 (+)
G372373 NA other downstream 836346 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 971138 16870434 ~ 16882185 (+)
G373726 NA other downstream 1804817 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 2168147 18067350 ~ 18177035 (+)

Expression


Co-expression Network