G371671


Basic Information

Item Value
gene id G371671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15935308 ~ 15936996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU422420
GTGTTCAAATTTCATAAATATTTATTACATATCAATGAACAGAATTTACTACTTTCACAGCAGTGGTCTACAGCACTTGTTCAAATAACTGAAATAATtgttcaaaaaataataataataatcattttagaataaagttTCATTTGAGGCCACATTtgaaacacaaacaattacaaGTAATACTTGGCATTAAAAACGATGGCGATACAATATTTTTAAGACACTTGgtgttatttttattatttttttctttcgTTTTGATATCACAGAGAGGTTGAGCAACAGTCTAAACACTAAATATTGATTTAGATACAAAAACCACTGCAAAAACATCAAGGAGTAGGGGCGGTGTGAACTTAACAGGGACGACGGAAACAAAggagagagtgacagggagaaTGAACAAAGTGATAGAAGCCGTATTACAAACCTTCAAACCACCAGACATCCCACTCCCATTCACCTACACTCATGTTAAGAACCAGGGTAATAAATAACAAGTCAAATTCCATTGTAAAAATAGTCTCCCTATGGTTTCCCTCTGGTTTCGCGTAATAGTATTGAAAGAGACCATATTGAGACAGGCaagtacagagagaaacagaagaaaaGGGTGTGATAGAGAGAAGGGGGCTCATGCTAGATCAGAAGAGGGGTGCCATTGTCACAAGCCGACCACACATGGGCACTCACATAGCCAAACAGATGCTTAAGCCAAGAACTCTCCCTAATATTCCTCTCcggacatgtactgtatgtaggttTGGCAGCAACATCACCGTGATCTGTATAGTAGTAACAACAGAGCCGCTCCCTAATATTCCTCTCAGCATGATGCAGCGTAAGACACTGAGAACACAATATCCTACCATCTAACCATaacccatctaccatctaaccctccTACCATCTAACCATAACCCATCTTCCATCTAACCCATCTACCATCTAATCCTCCTACCATCTAACCAtctaacccatctaccatctaaccataacccatctaccatctaaccctccTACCATCTAACCCTCCTACCATCTAACCATAACCCATCTTCCATCTaacccatctaccatctaaccctcctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctaccatctaacccatctaccatctaaccctccTACCATCTAACCAAAACCCATCtctcatctaaccctaaccctcataccatctaaccctaacccatctaaccctaaccatcCTA
>TU422423
GTGTTCAAATTTCATAAATATTTATTACATATCAATGAACAGAATTTACTACTTTCACAGCAGTGGTCTACAGCACTTGTTCAAATAACTGAAATAATtgttcaaaaaataataataataatcattttagaataaagttTCATTTGAGGCCACATTtgaaacacaaacaattacaaGTAATACTTGGCATTAAAAACGATGGCGATACAATATTTTTAAGACACTTGgtgttatttttattatttttttctttcgTTTTGATATCACAGAGAGGTTGAGCAACAGTCTAAACACTAAATATTGATTTAGATACAAAAACCACTGCAAAAACATCAAGGAGTAGGGGCGGTGTGAACTTAACAGGGACGACGGAAACAAAggagagagtgacagggagaaTGAACAAAGTGATAGAAGCCGTATTACAAACCTTCAAACCACCAGACATCCCACTCCCATTCACCTACACTCATGTTAAGAACCAGGGTAATAAATAACAAGTCAAATTCCATTGTAAAAATAGTCTCCCTATGGTTTCCCTCTGGTTTCGCGTAATAGTATTGAAAGAGACCATATTGAGACAGGCaagtacagagagaaacagaagaaaaGGGTGTGATAGAGAGAAGGGGGCTCATGCTAGATCAGAAGAGGGGTGCCATTGTCACAAGCCGACCACACATGGGCACTCACATAGCCAAACAGATGCTTAAGCCAAGAACTCTCCCTAATATTCCTCTCcggacatgtactgtatgtaggttTGGCAGCAACATCACCGTGATCTGTATAGTAGTAACAACAGAGCCGCTCCCTAATATTCCTCTCAGCATGATGCAGCGTAAGACACTGAGAACACAATATCCTACCATCTAACCATaacccatctaccatctaaccctccTACCATCTAACCATAACCCATCTTCCATCTAACCCATCTACCATCTAATCCTCCTACCATCTAACCAtctaacccatctaccatctaaccataacccatctaccatctaaccctccTACCATCTAACCCTCCTACCATCTAACCATCTaacccatctaccatctaaccataacccatctaccatctaaccaaAACCCATCtctcatctaaccctaaccctcctaccatctaaccctaaccctcctaccatctaacccatctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctaccatctaacccatctaccatctaaccctccTACCATCTAACCAAAACCCATCtctcatctaaccctaaccctcataccatctaaccctaacccatctaaccctaaccatcCTA
>TU422418
ACAGCACTTGTTCAAATAACTGAAATAATtgttcaaaaaataataataataatcattttagaataaagttTCATTTGAGGCCACATTtgaaacacaaacaattacaaGTAATACTTGGCATTAAAAACGATGGCGATACAATATTTTTAAGACACTTGgtgttatttttattatttttttctttcgTTTTGATATCACAGAGAGGTTGAGCAACAGTCTAAACACTAAATATTGATTTAGATACAAAAACCACTGCAAAAACATCAAGGAGTAGGGGCGGTGTGAACTTAACAGGGACGACGGAAACAAAggagagagtgacagggagaaTGAACAAAGTGATAGAAGCCGTATTACAAACCTTCAAACCACCAGACATCCCACTCCCATTCACCTACACTCATGTTAAGAACCAGGGTAATAAATAACAAGTCAAATTCCATTGTAAAAATAGTCTCCCTATGGTTTCCCTCTGGTTTCGCGTAATAGTATTGAAAGAGACCATATTGAGACAGGCaagtacagagagaaacagaagaaaaGGGTGTGATAGAGAGAAGGGGGCTCATGCTAGATCAGAAGAGGGGTGCCATTGTCACAAGCCGACCACACATGGGCACTCACATAGCCAAACAGATGCTTAAGCCAAGAACTCTCCCTAATATTCCTCTCcggacatgtactgtatgtaggttTGGCAGCAACATCACCGTGATCTGTATAGTAGTAACAACAGAGCCGCTCCCTAATATTCCTCTCAGCATGATGCAGCGTAAGACACTGAGAACACAATATCCTACCATCTAACCATaacccatctaccatctaaccctccTACCATCTAACCATAACCCATCTTCCATCTAACCCATCTACCATCTAATCCTCCTACCATCTAACCAtctaacccatctaccatctaaccataacccatctaccatctaaccctccTACCATCTAACCCTCCTACCATCTAACCATAACCCATCTTCCATCTaacccatctaccatctaaccctcctaccatctaaccctcctaccatctaaccataacccatctaccatctaaccctcctaccatctaaccctcctaccatctaaccataacccatctaccatctaaccctcctaccatctaaccctcctaccatctaaccataacccatctaccatctaacccatCTACCATCTAATCCTCCTACCATCTAACCATCTaacccatctaccatctaaccataacccatctaccatctaaccaaAACCCATCtctcatctaaccctaaccctcctaccatctaaccctaaccctcctaccatctaacccatctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctaccatctaacccatctaccatctaaccctccTACCATCTAACCAAAACCCATCtctcatctaaccctaaccctcataccatctaaccctaacccatctaaccctaaccatcCTA
>TU422421
ACAGCACTTGTTCAAATAACTGAAATAATtgttcaaaaaataataataataatcattttagaataaagttTCATTTGAGGCCACATTtgaaacacaaacaattacaaGTAATACTTGGCATTAAAAACGATGGCGATACAATATTTTTAAGACACTTGgtgttatttttattatttttttctttcgTTTTGATATCACAGAGAGGTTGAGCAACAGTCTAAACACTAAATATTGATTTAGATACAAAAACCACTGCAAAAACATCAAGGAGTAGGGGCGGTGTGAACTTAACAGGGACGACGGAAACAAAggagagagtgacagggagaaTGAACAAAGTGATAGAAGCCGTATTACAAACCTTCAAACCACCAGACATCCCACTCCCATTCACCTACACTCATGTTAAGAACCAGGGTAATAAATAACAAGTCAAATTCCATTGTAAAAATAGTCTCCCTATGGTTTCCCTCTGGTTTCGCGTAATAGTATTGAAAGAGACCATATTGAGACAGGCaagtacagagagaaacagaagaaaaGGGTGTGATAGAGAGAAGGGGGCTCATGCTAGATCAGAAGAGGGGTGCCATTGTCACAAGCCGACCACACATGGGCACTCACATAGCCAAACAGATGCTTAAGCCAAGAACTCTCCCTAATATTCCTCTCcggacatgtactgtatgtaggttTGGCAGCAACATCACCGTGATCTGTATAGTAGTAACAACAGAGCCGCTCCCTAATATTCCTCTCAGCATGATGCAGCGTAAGACACTGAGAACACAATATCctaccatctaaccataacccatctaccatctaaccctccTACCATCTAACCCTCCTACCATCTAACCATAACCCATCTTCCATCTaacccatctaccatctaaccctcctaccatctaaccctcctaccatctaaccataacccatctaccatctaaccctcctaccatctaaccctcctaccatctaaccataacccatctaccatctaaccctcctaccatctaaccctcctaccatctaaccataacccatctaccatctaacccatCTACCATCTAATCCTCCTACCATCTAACCATCTaacccatctaccatctaaccataacccatctaccatctaaccaaAACCCATCtctcatctaaccctaaccctcctaccatctaaccctaaccctcctaccatctaacccatctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctaccatctaacccatctaccatctaaccctccTACCATCTAACCAAAACCCATCtctcatctaaccctaaccctcataccatctaaccctaacccatctaaccctaaccatcCTA
>TU422422
ACAGCACTTGTTCAAATAACTGAAATAATtgttcaaaaaataataataataatcattttagaataaagttTCATTTGAGGCCACATTtgaaacacaaacaattacaaGTAATACTTGGCATTAAAAACGATGGCGATACAATATTTTTAAGACACTTGgtgttatttttattatttttttctttcgTTTTGATATCACAGAGAGGTTGAGCAACAGTCTAAACACTAAATATTGATTTAGATACAAAAACCACTGCAAAAACATCAAGGAGTAGGGGCGGTGTGAACTTAACAGGGACGACGGAAACAAAggagagagtgacagggagaaTGAACAAAGTGATAGAAGCCGTATTACAAACCTTCAAACCACCAGACATCCCACTCCCATTCACCTACACTCATGTTAAGAACCAGGGTAATAAATAACAAGTCAAATTCCATTGTAAAAATAGTCTCCCTATGGTTTCCCTCTGGTTTCGCGTAATAGTATTGAAAGAGACCATATTGAGACAGGCaagtacagagagaaacagaagaaaaGGGTGTGATAGAGAGAAGGGGGCTCATGCTAGATCAGAAGAGGGGTGCCATTGTCACAAGCCGACCACACATGGGCACTCACATAGCCAAACAGATGCTTAAGCCAAGAACTCTCCCTAATATTCCTCTCcggacatgtactgtatgtaggttTGGCAGCAACATCACCGTGATCTGTATAGTAGTAACAACAGAGCCGCTCCCTAATATTCCTCTCAGCATGATGCAGCGTAAGACACTGAGAACACAATATCCTACCATCTAACCATaacccatctaccatctaaccctccTACCATCTAACCATAACCCATCTTCCATCTAACCCATCTACCATCTAATCCTCCTACCATCTAACCAtctaacccatctaccatctaaccataacccatctaccatctaaccctccTACCATCTAACCCTCCTACCATCTAACCATAACCCATCTTCCATCTaacccatctaccatctaaccctcctaccatctaaccctcctacaatctaaccataacccatctaccatctaaccctcctaccatctaacccatctaccatctaaccctccTACCATCTAACCAAAACCCATCtctcatctaaccctaaccctcataccatctaaccctaacccatctaaccctaaccatcCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422420 False 1297 lncRNA 0.40 3 15935308 15936996
TU422423 False 1371 lncRNA 0.40 3 15935308 15936996
TU422418 False 1534 lncRNA 0.42 2 15935377 15936996
TU422421 False 1418 lncRNA 0.41 2 15935377 15936996
TU422422 True 1190 lncRNA 0.41 3 15935377 15936996

Neighbor

gene id symbol gene type direction distance location
ptges ptges coding upstream 76948 15852569 ~ 15858360 (+)
usp20 LOC106569850 coding upstream 95849 15816800 ~ 15839459 (+)
LOC118964570 NA coding upstream 103567 15829533 ~ 15831741 (+)
med22 med22 coding upstream 124806 15796177 ~ 15810502 (+)
LOC110523312 surf1 coding upstream 144280 15788795 ~ 15791028 (+)
LOC110523326 dusp26 coding downstream 497267 16434263 ~ 16437732 (+)
LOC110523327 LOC105015301 coding downstream 517599 16454595 ~ 16470342 (+)
pargl LOC106569224 coding downstream 579804 16516800 ~ 16557705 (+)
LOC110523336 NA coding downstream 753909 16690905 ~ 16694551 (+)
polm LOC106569276 coding downstream 775186 16712182 ~ 16726009 (+)
G371656 NA non-coding upstream 19230 15887238 ~ 15916078 (+)
G371661 LOC106594099 non-coding upstream 36012 15894375 ~ 15899296 (+)
G371653 NA non-coding upstream 65282 15869773 ~ 15870026 (+)
G371639 NA non-coding upstream 83587 15851370 ~ 15851721 (+)
G371632 NA non-coding upstream 119559 15815205 ~ 15815749 (+)
G371682 NA non-coding downstream 4666 15941662 ~ 15945451 (+)
G371689 NA non-coding downstream 15606 15952602 ~ 15957635 (+)
G371706 NA non-coding downstream 52890 15989886 ~ 15992865 (+)
G371733 NA non-coding downstream 94683 16031679 ~ 16032866 (+)
G371734 NA non-coding downstream 95458 16032454 ~ 16032686 (+)
G371615 LOC100194725 other upstream 140186 15791559 ~ 15795122 (+)
G371182 NA other upstream 806491 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 881752 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1129837 14798616 ~ 14805526 (+)
G370414 NA other upstream 1567147 14367672 ~ 14368161 (+)
G372281 LOC106569177 other downstream 282610 16218328 ~ 16220933 (+)
G372373 NA other downstream 798646 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 933438 16870434 ~ 16882185 (+)
G373726 NA other downstream 1767117 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 2130447 18067350 ~ 18177035 (+)

Expression


Co-expression Network