G372281 (LOC106569177)


Basic Information

Item Value
gene id G372281
gene name LOC106569177
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16218328 ~ 16220933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU423146
CTTTTATTCATTCATTCCTTTATTATTGCTGTGTTTCTCTCCTTCAAAGTGTGGGAAAGAAAAGCCGCCCTCTCTTCAGCTCCTCCGATTCCTTCTTGCCAATCACCAGTCGACACCCGTACTGCCGTCCAATCATATCTCTCCTTAACCACCTCGTCATCACCTCAAACTGCCATCCAGAATAAGCCTACATTTAGAGTAGGTACTATTGTTCAATTCATTTTAAGTCGTCAGTTTAACTCAATCTCATTATCTCACTCTCAAGGCCAGGAGTTGTTCATGACCATGTGACCTGGCCAGAAATAAAGCCCTAGACTAGTCATGCATATAAATATATCTGTTATTGTTGTAGTTGTCATACAGAAAGCCTGTGTAAGTATGGAGATGAGACAATCGCCATGTTTCTCACCATGAGACCATGTTTACAGACAATTACTGAACTAACCCTGTTTTAACCTGTTATGACACTTTTTCCTATCTCTCGCTTCCTCCCATTCCCCAAATGAACAAACACTCAGCAGTAATGTCACTATCTCCTTCATTTAAACTGAGACCCAAACTCTCAGGCTTAGCAAAAATACCCTGTCATTCCGAActtcagagagatagatagataaatagagaaagtgaaatagagagagagagagagagatataattcATCAGTGAGTTTGTCTTTTCTCCTGAGGCCTCTCGCTGATTCCCAATTATTGTTCCACTCTGTAGGTCTTCTGATCAAAGCTAAAAATCCCTGAAAACCTTTTGCCATTAAGAGGGGCTATAAAACCTTTCATGCCTCACCATTCATCTAATAACACCATTCCACTTGGATATGTAACACCATATGTTAGGTTTCACTGCTGATCAGGCCATTTGCCAGCTTTTCCGATCAGAGCTGTTTACTAGTCCTAAAACCAACATTCAGCCAATCACATTGGCTCTTCTAGCCCTAAAACCAACATTCAGCCAATCACATTGCCTCTTCTAGCCCTAAAACCAACATTCATCAAACTACCACACTGTGAGTATGAGTGTGAGTGACCAAACACATCATCAAACTACCACACTGTGAGTATGAGTGTGAGTGACCAAACACATCATCAAACTACCACACTGTGAGTATGAGTGTGAGTGACCAAACACATCATCAAACTACCACACTGTGAGTATGAGTGTGAGTGACCAAACACATCATCAAACTACCAcactgtgagtgtgagtgtgagtgaccAAACACATCATCAAACTACCACACTGTGAGTATGAGTGTGAGTgaccaaacacacaaacacagttccaTCACCACTTCTCTTCCATTCGCTGTTCCTTTTCTATCACTTCCCTGTTCCTTTCTTCATAACTCTTCATAGTCTGATGCCTGAGAGAGGGCAGCTGTTCTCAACGTCACAGCACTTCACATCCAATGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACATTCCTACAGTATGTCACTTTGACTTCTGTAACGCTTGGTGTTGAACACCCTGTAAATGAGTTGAGAGCATGTAATGAAATACATCTAAAGCATCTTGACTACTAACTTGTCACTGACACTATAGGCTACATTAACAGTGAAAGACTTCTGCTACATGATTATTCTCAATTCTCTACTTATTTACTAATAACAAATACAATCATTATTCTCTATAAAAAAtactaggatctgtccatatggCAATAATTTATAGAATAATAGATCCTTTGATGTTCCTTTTCTGTGAATGTGTTGAAATATGTTCAGGTCATGCGCAATTCTGTCCAGCTGTGTGTTGTGAAAGGACAGAAAAACTAGTCTTGAAATCCAGCTCACTCAACATTTTAGGAATATGGACCGAATGAGGCCTACAAAACACTATTGCATTTCAGAGTGCGTTAGAAGCTCTGATAACAGTCTGTGTCAGTCATTTTATTGTGTGGTGTCTGTTGCAGCATCAGTGTCAGTCAGCTAGGAGCCCCCAGCCCCAGAGGCCTCAAATGAAGTCACGGCCTGTAGTAGCTCTCCCAGCCCGTCTTCCTAGCTCCGTTGTGGGACACTGGAGTCCTCAGGGCTGCTGTCCAGCAACTCATCCTCTGAGAAGCTGATGTGCAGACAGGTGTCATTgatgggggaggagaaggggagcgTGTGCTCGTAGCTGTCCGCGTGTGTGCCTGGGGTGGTGGTGACGCATGACAGGGGCGCAGTTTCCCCCTTCATGTCTTCTAGGGGGCTGCCACAGCCGCTAGAGGCAGTCAGGAATGCCCCCCTGTCCCCAAACGGGTCCTC
>TU423147
aacacacaaacacagttccaTCACCACTTCTCTTCCATTCGCTGTTCCTTTTCTATCACTTCCCTGTTCCTTTCTTCATAACTCTTCATAGTCTGATGCCTGAGAGAGGGCAGCTGTTCTCAACGTCACAGCACTTCACATCCAATGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACGTTCCCACAACATTCCTACAGTATGTCACTTTGACTTCTGTAACGCTTGGTGTTGAACACCCTGTAAATGAGTTGAGAGCATGTAATGAAATACATCTAAAGCATCTTGACTACTAACTTGTCACTGACACTATAGGCTACATTAACAGTGAAAGACTTCTGCTACATGATTATTCTCAATTCTCTACTTATTTACTAATAACAAATACAATCATTATTCTCTATAAAAAAtactaggatctgtccatatggCAATAATTTATAGAATAATAGATCCTTTGATGTTCCTTTTCTGTGAATGTGTTGAAATATGTTCAGGTCATGCGCAATTCTGTCCAGCTGTGTGTTGTGAAAGGACAGAAAAACTAGTCTTGAAATCCAGCTCACTCAACATTTTAGGAATATGGACCGAATGAGGCCTACAAAACACTATTGCATTTCAGAGTGCGTTAGAAGCTCTGATAACAGTCTGTGTCAGTCATTTTATTGTGTGGTGTCTGTTGCAGCATCAGTGTCAGTCAGCTAGGAGCCCCCAGCCCCAGAGGCCTCAAATGAAGTCACGGCCTGTAGTAGCTCTCCCAGCCCGTCTTCCTAGCTCCGTTGTGGGACACTGGAGTCCTCAGGGCTGCTGTCCAGCAACTCATCCTCTGAGAAGCTGATGTGCAGACAGGTGTCATTgatgggggaggagaaggggagcgTGTGCTCGTAGCTGTCCGCGTGTGTGCCTGGGGTGGTGGTGACGCATGACAGGGGCGCAGTTTCCCCCTTCATGTCTTCTAGGGGGCTGCCACAGCCGCTAGAGGCAGTCAGGAATGCCCCCCTGTCCCCAAACGGGTCCTCTTCGTCGTGGAGGGGCGAGAGATGCGATTTAGTCTCGGAGCGGACGCCGGAATCCTCGCTAGCTGAGCCGCACGAGCCGCTCTCGCCGCCTCCGTTGCTGAGCTGGTGGAAGTCTCCTGAGAGTCCGGAAGAGAGGGAGCAGGGCGTGATGTCCGGGAAGGACAGGCTCTCGCTCCGGCTCGGAACGCCACCATTCCCGTCTACTTGTGTGGTCAGGGGCATGGTCAGCGGGTTGAACTCCAACCCCGGAGAGACAGTTCGGCTGGCTCGCTTACGGTTGAAGG

Function

NR:

description
uncharacterized protein LOC109868775

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU423146 False 2322 lncRNA 0.44 1 16218328 16220649
TU423147 True 1328 TUCP 0.50 1 16219606 16220933
Loading

Neighbor

gene id symbol gene type direction distance location
ptges ptges coding upstream 359968 15852569 ~ 15858360 (+)
usp20 LOC106569850 coding upstream 378869 15816800 ~ 15839459 (+)
LOC118964570 NA coding upstream 386587 15829533 ~ 15831741 (+)
med22 med22 coding upstream 407826 15796177 ~ 15810502 (+)
LOC110523312 surf1 coding upstream 427300 15788795 ~ 15791028 (+)
LOC110523326 dusp26 coding downstream 213614 16434263 ~ 16437732 (+)
LOC110523327 LOC105015301 coding downstream 233946 16454595 ~ 16470342 (+)
pargl LOC106569224 coding downstream 296151 16516800 ~ 16557705 (+)
LOC110523336 NA coding downstream 470256 16690905 ~ 16694551 (+)
polm LOC106569276 coding downstream 491533 16712182 ~ 16726009 (+)
G372279 NA non-coding upstream 1457 16216672 ~ 16216871 (+)
G372270 NA non-coding upstream 6915 16211123 ~ 16211413 (+)
G372255 NA non-coding upstream 17182 16200783 ~ 16201146 (+)
G371818 NA non-coding upstream 52524 16161694 ~ 16165804 (+)
G371819 NA non-coding upstream 53334 16163837 ~ 16164994 (+)
G372288 NA non-coding downstream 26634 16247283 ~ 16247571 (+)
G372304 NA non-coding downstream 62508 16283157 ~ 16302922 (+)
G372329 NA non-coding downstream 108759 16329408 ~ 16329658 (+)
G372331 NA non-coding downstream 110442 16331091 ~ 16331347 (+)
G372333 NA non-coding downstream 114536 16335185 ~ 16335553 (+)
G371615 LOC100194725 other upstream 423206 15791559 ~ 15795122 (+)
G371182 NA other upstream 1089511 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 1164772 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1412857 14798616 ~ 14805526 (+)
G370414 NA other upstream 1850167 14367672 ~ 14368161 (+)
G372373 NA other downstream 514993 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 649785 16870434 ~ 16882185 (+)
G373726 NA other downstream 1483464 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 1846794 18067350 ~ 18177035 (+)
G376320 NA other downstream 3762612 19983261 ~ 19983848 (+)

Expression

G372281(LOC106569177) Expression in all Baseline Samples

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G372281(LOC106569177) Expression in each Bioproject

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G372281(LOC106569177) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network