G372518


Basic Information

Item Value
gene id G372518
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16637303 ~ 16639895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU423488
CTTACCATAAACAACCAAACCTTACCATAAACAACCAAACCTTACTATAAACAACCAAACCTTACTATAAACAACCAAACCTTACCATAAACAACCAAACCTTACCCTAAACAACCAAACCTTACCCTAAACAACCAAACCTTACCCTAAACAACCAAACCTTACTATAAACAACCAAACCTTACCATAAACAACCAAACCTTACCATAAAACCTTATTATAACAACCAAACCTTACCATAAACAACCAAACCGTACTATAAACAATCACATTTTACCATAAACAACCAAACCTTACCATAAACAACCAAACCTTACCATTATCAACCAAACCTTACCCTAAACAACCAAACCTTACCATAAACAACCAAACCTTACCATAAACAACCAAACCTTACTATAAGCAACCAAAGCTTACTATAAACAACCAAACCTTACTATAAACAACCAAACCTTACCATAAACAATCAAACCTTACCATAAACAATCAAACCTTACTGCAAACAATCAAACCTTACTGCAAACAATCAAACCTTACTATAAACAACCAAACCTTACCATAAACAACCAAACCTTACTATAAACAACCAAACCTTACCATAAACAACCAAACCTTACCCTAAACAACCAAACCTTACCCTAAACAACCAAACCTTACCCTAAACAACCAAACCTTACTATAAACAACCAAACCTTACCATAAACAACCAAACCTTACCATAAAACCTTATTATAACAACCAAACCTTACCATAAACAACCAAACCTTACCATAACAACCAAACCCTACCATAAACAACCAAACCCTACCATAAACATGACTATTGGAGTCTACTGTACACATCCATTGCTGTCCTGAGAGTTTGACCTATAGAGGTCTATAGAACAGCGTATGTTATATCTATGGTGGGTTTGACCGCTGACAGTGCACATGAATAGAACATTTTAACTACATAGCTAAAGTAACTGAAGCTACAGTGCATCAGACTACGCTGGATAGTCAGACTaataggctacacacacacacaaacagctgaCACGCAGTGTACACAACGAGCAgtaataaacacacactcacacccaaaCAGCAtgcccacaaaacacaatacaacaccacaTAACACTGCCAATTGTAGGAGGTGGGAGAGAataatagagagaagagagaggagaagagcgagatgagaagagaggagaggagaagataggagaagagagaggagaagagagacaggataagagagatgaaaagagagatgaggagaagataggagaagagagaggagaagagagaggagaagagagtagagaagagagatgaggagagaggggagaagagagatgagaagagagaggagaagagagaggagaagagagaggagaagagagaggagaagagagatgagaagagagatgaggagaagagagattaagagagaggagaagacaagagagaagagaagagagtggagaagagagaagagtggagaagagaagagagatgagaagagaagagagaagagagatgagaaataagaagagaagagagatgaggagatgagaagagaagagagatgagaagagaagagagatgagaagagagctgagaagagaagagagatgagaagagagctgagaagagaagagagatgaaaagagagatgagaagagaagagagatgaaaagagagatgaGAAGGGAGGATACACGTGTTTATGTATCTTACCTTGACGTCAGCCTTCTTGTTGAGGAGACTCTTGGCTGCCAAGGAGATTGAGAAGACACTCTCAGAGGGTAGAGTAGTCATCCTACACACTCTATTGCTaaaacacacctcacacacacacgcacaagtgTCGACACCTAGCTATCCCCAagctagctaacacacacacactaaactaaCCTaaaccctctctcacacacacagaactcTCGAAAGCGAACACACTGAAACGCCAAACTCTAAACAGTGCCAACACACCCACTAAagctcatacacacacaaactactgtaAACCCCTACAAACGAGCACACTAAAACATTTagaatcgcacacacacacacattctcactgAGACAACAGTGATCTACTTTGTACTGTAACTATCTctcataaacccccccccccacacacacacacacacacacaagcacacacattcatacacacacatgcacaaaaacCTCTATCCAACTGACACTCATTAACCCTGAACCTGAACCACTGCCCAAAGCAAGGGATCAGCACAGTCCATCAGGGatagcacacacacgcacgcacacacacacatacacacacacacaggggattaGAGGTGAAAGTGTAGTGGAATATGAAATGGAGAAGCAGGTGTATAATAATGGTTTTGTTCATCTCTGCGGCAGGTGGGATTCATTCAGATTAACATTAGGGGATTCCTCACCAGGAAAATAATACAGGAATATAATTCAGTAAGGAGAGCCATGTAAATGATGATACacaaacactttacattacaataTAAACtgatcataaacacacacactcataaatgCTTGCAGGAAGGTTTATGAATCTTTCTGTATTAATA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106591269 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU423488 True 2572 lncRNA 0.40 2 16637303 16639895

Neighbor

gene id symbol gene type direction distance location
pargl LOC106569224 coding upstream 79598 16516800 ~ 16557705 (+)
LOC110523327 LOC105015301 coding upstream 166961 16454595 ~ 16470342 (+)
LOC110523326 dusp26 coding upstream 199571 16434263 ~ 16437732 (+)
ptges ptges coding upstream 778943 15852569 ~ 15858360 (+)
LOC118964570 NA coding upstream 805562 15829533 ~ 15831741 (+)
LOC110523336 NA coding downstream 51010 16690905 ~ 16694551 (+)
polm LOC106569276 coding downstream 72287 16712182 ~ 16726009 (+)
ved LOC106569620 coding downstream 92741 16732636 ~ 16735129 (+)
purbb LOC106562912 coding downstream 101458 16741353 ~ 16744067 (+)
LOC110523342 LOC106569363 coding downstream 309507 16949402 ~ 16967809 (+)
G372506 NA non-coding upstream 27526 16609502 ~ 16609777 (+)
G372505 NA non-coding upstream 29566 16607332 ~ 16607737 (+)
G372480 NA non-coding upstream 63838 16572844 ~ 16573465 (+)
G372381 NA non-coding upstream 78246 16558656 ~ 16559057 (+)
G372374 NA non-coding upstream 157901 16476526 ~ 16479402 (+)
G372373 NA non-coding downstream 95747 16735642 ~ 16738500 (+)
G372560 NA non-coding downstream 111349 16751244 ~ 16752267 (+)
G372570 NA non-coding downstream 131515 16771410 ~ 16773528 (+)
G372589 NA non-coding downstream 170036 16809931 ~ 16810186 (+)
G372281 LOC106569177 other upstream 416370 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 842181 15791559 ~ 15795122 (+)
G371182 NA other upstream 1508486 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 1583747 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1831832 14798616 ~ 14805526 (+)
G372618 LOC105030512 other downstream 230539 16870434 ~ 16882185 (+)
G373726 NA other downstream 1064218 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 1427548 18067350 ~ 18177035 (+)
G376320 NA other downstream 3343366 19983261 ~ 19983848 (+)

Expression


Co-expression Network