G372570


Basic Information

Item Value
gene id G372570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16771410 ~ 16773528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU423542
GGTTTATTTACTAACAAACAGCAGATATTGAAATAGTTCAATGCAATGTTCTCTGCACACACAACTCTCAGCTTCCAGAGAAGAATTGGGAAAAAAATCTATACAAAAAATTCCTGGAGAGAAACTAGCGCTGGTCCGGTTCTCATCATCATGGTAACAGTATTCTACATTTGTACCTGAAAACTACGAGTTTAAATCTGCATCCTTGATTCATATTCTCTCTAGataagcatatatatatatatatatatattaatataccGTTTTTTACCCCCATCAAAAAACCCAACATTTCTCCCAAACAATATAAGTAGCATAAGTAATGATGACCTTTTTACAATATACATTGTCTTTTAATACAATATAAATGGACTTGAAACATAATCAACAGTACAATATTGTTAAAACAGCTGGGAAATATTTACTTTGAATCACATAGTTAATCCCTTGTCTTAGCATGTCATTAATTAGTGTATGTCTGTAATTAGATCAACTAAAAAAACGCTTTATGGGGTGGAGAACGACTGAGGTAACCAAGATGGCCGCCAAAATAGGCAACCCCTATCATGGTTGCTGGGAAACATGGGTCGTATTCATTaagcaccaaacggaagaaaacgtactgaaacagggagggactacctagACTTGTCCAATAAGGACAATACTTGTccaatttatttttgttttccgtttcaaaacattttgctacagtgtgcactaATAAATTTAACCCTGGTAGAGTCTCTGGTCCACGCCAAAGACTCCAATCTCCATTCCAAACCCCTATGTTAGCAGATCTGAAAGAACCAGATGGGTGCTGCCATCACCTTTTCATCAGACCTGTTTACACTAAGGGCTAGGGCCTAGGAGCAAAGGGTAGACAACTAGGGGCCAGGGGAAGGTGTTAGGGGAAGGACCAAGGGGTTGATTCTGGACCAGGCCTTTATCTAGGCGTTTCCTGTCTCCACAGGGCACTGGGTAACATATGTATTCCCTGCACACATGTGTAGTTACACTGCAACATGGGAAATTGAGTTTCCTGAAagagtctctcacacacacacacacaacttctgtgtgtgtgtggaatgttaATGGAACTCAACCTACTCGGCTGTCAAGGATGAGAAAATCAACAAGGTGCTTTAGAtgtgacagacacaaacacattgtCTATTCTGTATGGTGTTTATGTGGACTTGTGTCTGTTTTATCTATTCTGTATGGTGTCTGGGTAAATAAAGGGGATTGTGATTGTCTCTATGGCAACTTGGCCAAACAAAAGGAATGCATGAAAGCAGACTGGGTCAGAGTTGGCACGCCGTAAGAGAGGTCAAATGGGAGagggcacgcacacacagctcagacctGAAGCTAAACATTGACTGTGCAAAGGAATGGACACAAGCGTTGCATCAGCTCTCTTAAAGGGATAGTATGAACATTTTCAAATACATATTTGTCTATCTAGACCTAATGGGAGTGTATCAAATAAAATATGGACGTATAATCAAACAGCTAAAGCAAATCACCAAAAGCGGTGTACACATTTCTGTGAAAAAGGGCTTTTTTTGACCAACCTGTGTCTAATGCTTGGATGGACGGGTTGTGACAACACACACAGGGGGTTGACGTGAGTTGCTTTGGCACACAGATAGGCTAATAATGAAGGAACAGGCAATGTAACTTTTAGGCAAAGGAGGCTAATTTACAACAGGGAGgagaggtgcacacacacacacacacacacacacacacgattggcATGAATGTGAAACGTACAATGAATGAGGAAAACGGCTGAGGATAGTGCAGTagccacacacaccactcacacagATGCTCACTCCAGCCaggtccaatcactgcattccagAGATAAGAGATTCACTGATAAAAATATAGATCTTTTTTAAAAAGCCTCCTTGTTGGTTGTCTGAGTAACACATAGTTCTGACAGAGAGAACTTCATTACCCATGAGCCTCCTCTTCCGTTGAACTTTCCTGGGATTTACTGCCACCTGTGGAACCCAgccaatgagagagagggggaggccgTGAGTGGG

Function

NR:

description
metal transporter CNNM3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU423542 True 2069 lncRNA 0.41 3 16771410 16773528

Neighbor

gene id symbol gene type direction distance location
purbb LOC106562912 coding upstream 27343 16741353 ~ 16744067 (+)
ved LOC106569620 coding upstream 36281 16732636 ~ 16735129 (+)
polm LOC106569276 coding upstream 45401 16712182 ~ 16726009 (+)
LOC110523336 NA coding upstream 77980 16690905 ~ 16694551 (+)
pargl LOC106569224 coding upstream 213705 16516800 ~ 16557705 (+)
LOC110523342 LOC106569363 coding downstream 175874 16949402 ~ 16967809 (+)
st8sia5 st8sia5 coding downstream 221866 16995394 ~ 17012011 (+)
LOC110522812 loxhd1 coding downstream 246059 17019587 ~ 17071539 (+)
atp5fa1 LOC106569424 coding downstream 346259 17119787 ~ 17125777 (+)
LOC100136246 LOC106569430 coding downstream 352828 17126356 ~ 17147778 (+)
G372560 NA non-coding upstream 19143 16751244 ~ 16752267 (+)
G372373 NA non-coding upstream 33190 16735642 ~ 16738500 (+)
G372513 NA non-coding upstream 82425 16624136 ~ 16688985 (+)
G372507 LOC106569240 non-coding upstream 108914 16609896 ~ 16662496 (+)
G372589 NA non-coding downstream 36403 16809931 ~ 16810186 (+)
G372597 NA non-coding downstream 49500 16823028 ~ 16823918 (+)
G372599 NA non-coding downstream 53464 16826992 ~ 16827246 (+)
G372601 NA non-coding downstream 54886 16828414 ~ 16829061 (+)
G372602 NA non-coding downstream 56213 16829741 ~ 16830059 (+)
G372281 LOC106569177 other upstream 550477 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 976288 15791559 ~ 15795122 (+)
G371182 NA other upstream 1642593 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 1717854 15047739 ~ 15054353 (+)
G372618 LOC105030512 other downstream 96906 16870434 ~ 16882185 (+)
G373726 NA other downstream 930585 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 1293915 18067350 ~ 18177035 (+)
G376320 NA other downstream 3209733 19983261 ~ 19983848 (+)
G377022 NA other downstream 3817952 20591480 ~ 20596863 (+)

Expression


Co-expression Network