G373542


Basic Information

Item Value
gene id G373542
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17483705 ~ 17487049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU424686
TCTCCTCCATTAGCAATGATAAGCTCATACAGAGTACAAAGCATTTACGCAGAAGCCcagtaacacaacataacaacccaCATGTAAAAgtttacagtttactatagaatactacagtacttactatagaattctgtggTAAACTGTAGAATACCCAcctactacacactgtagtataccTCGAgaatgtgtagtacttactatagaatgttgtagtatactgtagagtaaatactacagtatacttcAGACCACAAAAACACCACAGCAAATACTATAGTAATGTTCACAAAAACACTAGTCTGCAAAACACTTTAATAGTACAGTAAtatccgcaaaaacactacagtaattactatagtatacatTCAAGTATTTGATTTGCATATACACTGCCCATTAACCCATATCCCAATGTGTGCCACCCATacgaaacctacatgccaagtatagaccatataaTGTGTTACCTACAGTTTATTAAaaaaaagagcagaagctctgaatcCTACATACGTGTTATGGAAAATCTGCTCTTTGAGTATTTtgtccagtaggtttcctcaaaGACAAAGCCATCACTGCTATGTCAATGATATAACAAAAGCAGTATTGTAaatactactgtaatgtctgcaaaaacactagagtaaatactacagtactttAGTCTGcataaacactacagtgaatactacagtaaagtccgcAAAaccactacagtgaatactaaaCTGTTTTTTCATGTGGGAACACACGCCTTTGATAATCTTCAAAATTAAATAATTTTTAACTGATTTATTACGATTACTTAGCAGCTGTAAACAGTTCAAATGATTGTACAATCTCAGAGGCTGGGTGGACTCATCTTCAACCGATAAGCTGAGGTATGTATTTTTACAAATTTCTTGAACCGGACAATCACAACACCGCTATTGTGGCAACACTTCATGACAAATCACAGCCCTGTCAGTTTCATGACAACAACAGACAACCTATCATAACATTTGATGACATTTGATGACTTTGACAGATATGATACAGtacataaacaaacaacaaaccctTTTATACAACAAACCCTGTtcctgtcacgctctgaccttagatatctctgttttctttatattttggttaggtcagggtgtgacgagggtgggtatactagtttttgtattgtctaggtttttgtatgtctaggggttttgtaggtctaggtcatttgtatgtctatggtggcctgatattgttcccaatcagagtcagctgtttatcgttgtctctgattggggatcatatttaggtagccattttcctttttgtgtttgtgggttcttgtctatgtgtagttgcctatTAGCACTCATTTGTATAGCATCACatgtcgttttgttattttggttagtttGTTCTGTGTTCATCCTTataaagaatgtacgcataccacgctgACGAACGGGACAgttcctgtaggtttttgctccaatcCTAATTTAGCACACCTTAATCTGACAACGAGCTGGTTGATAAGCCAAATCAGGCTATACTTCTGGGGTTGGAACgagaacctacaggaggatagctctccaggaacaagttTGGAGAGCCTTGGTCTAGATCCATAATTCCCTGTTTCCTAACAGTGTCATTGTGTCGACTGACATAACTGTGATGTTAAGACACAGTGTTGCGTGGGAACTAGAAACCATGATGGAAGTGAAATATTAGGCTACCAGTTATTTTCCACAACATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACAACATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAAAAGAGTAAAACATGCATGAATACAGCTACAAAATTCCACCGCCACTGTATTTATATGACATATAGATTCCTTAGCCTCCAAATTAAGTAGGCTGTCAGTCATAAAGTAATATTTTCTTTGTTAACAAGGATAAATTAGTCAGAACAACTATTCCTGTTCAGCAGAAGAGTTTACAATATTTTAGCACACAGAAAAGCAGCATAAAATTCTAGTGCAAGACACTCATCGTTAAAAATGAATATTCACAATCACTGTTCAAATACAAACAAAACAACATAAAATAATATCCTTCGCTGTATCTCATAAGTACACTGCTTAACTGTTGGTGGTTGGTTGATTCTATTCCCTTTTATTCCCAGTCCTCTTGTCTAAGTGTGCAGCAGCAGGAGGCATCTCTCATCCCTGCATGGTCTCTTGTCATGTTCTAATCAGTCCCAAGGCAACTGAATAGGCACATCACTGCGTTCGCCTCGGCTCTGAGTGTCCCTCCCTTTGACTGAGAGGTGTGGAGCACAACAAGTGTCCCTCTGCATCCATCCTCTCACTCCCACCTTTGACAGAGGTGCGGAGCACAACAAGTGTCCCCCTGCATCCATCCACCCTCCCACTCCCCTCTTTGACTGAGCATAGCCCAGCAAGAGGCACAGGTATTGTCCACTGGTAAGGATGAATCCATGCATATCATATGACATTCAATAAGATGTCCCTCTTAAGTGTGAGATGTCATCCTTAAATGTCACCAGTCAGTCATGACCCTAAAGAGCCATGAGGAAATTGATGTCCACTGGCTACTGCACGGCTGAATGAAGGTTGACTGCACAATTTCTTTGTGACATTAAGTGTGTCTCATAGGTCATATATAACCTGTGGAAGGAAAAAAAGGAGAAAATGTGCCCCCTTAAACATCAGTTTAAGAACAATGTGTTCTACTTATGGTTTTCAATACAAAAGAGGTACTGGAATGGAAGGTTGCATATTTGGTGCAAGCAAATGGAATGCAATGTTCGAGACAAGACAATCAAAGTGCAGTATGATACAAGATGATGCTCAAATCAAATCTTTCTTACATCTATAGTTAATGTTGTCTTTTCCAATCAGACTTTCCCCATAGAGAGATTGGCATGTAATTGAACATAATCAA
>TU424688
TCTCCTCCATTAGCAATGATAAGCTCATACAGAGTACAAAGCATTTACGCAGAAGCCcagtaacacaacataacaacccaCATGTAAAAgtttacagtttactatagaatactacagtacttactatagaattctgtggTAAACTGTAGAATACCCAcctactacacactgtagtataccTCGAgaatgtgtagtacttactatagaatgttgtagtatactgtagagtaaatactacagtatacttcAGACCACAAAAACACCACAGCAAATACTATAGTAATGTTCACAAAAACACTAGTCTGCAAAACACTTTAATAGTACAGTAAtatccgcaaaaacactacagtaattactatagtatacatTCAAGTATTTGATTTGCATATACACTGCCCATTAACCCATATCCCAATGTGTGCCACCCATacgaaacctacatgccaagtatagaccatataaTGTGTTACCTACAGTTTATTAAaaaaaagagcagaagctctgaatcCTACATACGTGTTATGGAAAATCTGCTCTTTGAGTATTTtgtccagtaggtttcctcaaaGACAAAGCCATCACTGCTATGTCAATGATATAACAAAAGCAGTATTGTAaatactactgtaatgtctgcaaaaacactagagtaaatactacagtactttAGTCTGcataaacactacagtgaatactacagtaaagtccgcAAAaccactacagtgaatactaaaCTGTTTTTTCATGTGGGAACACACGCCTTTGATAATCTTCAAAATTAAATAATTTTTAACTGATTTATTACGATTACTTAGCAGCTGTAAACAGTTCAAATGATTGTACAATCTCAGAGGCTGGGTGGACTCATCTTCAACCGATAAGCTGAGGTATGTATTTTTACAAATTTCTTGAACCGGACAATCACAACACCGCTATTGTGGCAACACTTCATGACAAATCACAGCCCTGTCAGTTTCATGACAACAACAGACAACCTATCATAACATTTGATGACATTTGATGACTTTGACAGATATGATACAGtacataaacaaacaacaaaccctTTTATACAACAAACCCTGTtcctgtcacgctctgaccttagatatctctgttttctttatattttggttaggtcagggtgtgacgagggtgggtatactagtttttgtattgtctaggtttttgtatgtctaggggttttgtaggtctaggtcatttgtatgtctatggtggcctgatattgttcccaatcagagtcagctgtttatcgttgtctctgattggggatcatatttaggtagccattttcctttttgtgtttgtgggttcttgtctatgtgtagttgcctatTAGCACTCATTTGTATAGCATCACatgtcgttttgttattttggttagtttGTTCTGTGTTCATCCTTataaagaatgtacgcataccacgctgcaccttggtccgattcatatgACGAACGGGACAgttcctgtaggtttttgctccaatcCTAATTTAGCACACCTTAATCTGACAACGAGCTGGTTGATAAGCCAAATCAGGCTATACTTCTGGGGTTGGAACgagaacctacaggaggatagctctccaggaacaagttTGGAGAGCCTTGGTCTAGATCCATAATTCCCTGTTTCCTAACAGTGTCATTGTGTCGACTGACATAACTGTGATGTTAAGACACAGTGTTGCGTGGGAACTAGAAACCATGATGGAAGTGAAATATTAGGCTACCAGTTATTTTCCACAACATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACAACATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAACATCATAAAGGTTTTCCAAAAGAGTAAAACATGCATGAATACAGCTACAAAATTCCACCGCCACTGTATTTATATGACATATAGATTCCTTAGCCTCCAAATTAAGTAGGCTGTCAGTCATAAAGTAATATTTTCTTTGTTAACAAGGATAAATTAGTCAGAACAACTATTCCTGTTCAGCAGAAGAGTTTACAATATTTTAGCACACAGAAAAGCAGCATAAAATTCTAGTGCAAGACACTCATCGTTAAAAATGAATATTCACAATCACTGTTCAAATACAAACAAAACAACATAAAATAATATCCTTCGCTGTATCTCATAAGTACACTGCTTAACTGTTGGTGGTTGGTTGATTCTATTCCCTTTTATTCCCAGTCCTCTTGTCTAAGTGTGCAGCAGCAGGAGGCATCTCTCATCCCTGCATGGTCTCTTGTCATGTTCTAATCAGTCCCAAGGCAACTGAATAGGCACATCACTGCGTTCGCCTCGGCTCTGAGTGTCCCTCCCTTTGACTGAGAGGTGTGGAGCACAACAAGTGTCCCTCTGCATCCATCCTCTCACTCCCACCTTTGACAGAGGTGCGGAGCACAACAAGTGTCCCCCTGCATCCATCCACCCTCCCACTCCCCTCTTTGACTGAGCATAGCCCAGCAAGAGGCACAGGTATTGTCCACTGGTAAGGATGAATCCATGCATATCATATGACATTCAATAAGATGTCCCTCTTAAGTGTGAGATGTCATCCTTAAATGTCACCAGTCAGTCATGACCCTAAAGAGCCATGAGGAAATTGATGTCCACTGGCTACTGCACGGCTGAATGAAGGTTGACTGCACAATTTCTTTGTGACATTAAGTGTGTCTCATAGGTCATATATAACCTGTGGAAGGAAAAAAAGGAGAAAATGTGCCCCCTTAAACATCAGTTTAAGAACAATGTGTTCTACTTATGGTTTTCAATACAAAAGAGGTACTGGAATGGAAGGTTGCATATTTGGTGCAAGCAAATGGAATGCAATGTTCGAGACAAGACAATCAAAGTGCAGTATGATACAAGATGATGCTCAAATCAAATCTTTCTTACATCTATAGTTAATGTTGTCTTTTCCAATCAGACTTTCCCCATAGAGAGATTGGCATGTAATTGAACATAATCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424686 False 3115 lncRNA 0.38 3 17483705 17487049
TU424688 True 3136 lncRNA 0.38 2 17483705 17487049

Neighbor

gene id symbol gene type direction distance location
LOC110523353 LOC106569485 coding upstream 240794 17235812 ~ 17242911 (+)
LOC110523352 LOC106569472 coding upstream 266519 17191416 ~ 17217186 (+)
LOC100136246 LOC106569430 coding upstream 335927 17126356 ~ 17147778 (+)
atp5fa1 LOC106569424 coding upstream 357928 17119787 ~ 17125777 (+)
LOC110522812 loxhd1 coding upstream 412166 17019587 ~ 17071539 (+)
tnpo1 LOC106569531 coding downstream 240472 17727521 ~ 17778710 (+)
LOC110523357 LOC106569536 coding downstream 304811 17791860 ~ 17871592 (+)
LOC110523359 LOC106569632 coding downstream 390568 17877617 ~ 17879225 (+)
tmem174 LOC106569163 coding downstream 413444 17900493 ~ 17930164 (+)
btf3 btf3 coding downstream 553654 18040703 ~ 18047631 (+)
G373517 NA non-coding upstream 43975 17439221 ~ 17439730 (+)
G373506 NA non-coding upstream 56226 17420487 ~ 17427479 (+)
G373499 NA non-coding upstream 70372 17413114 ~ 17413333 (+)
G373438 NA non-coding upstream 115768 17367618 ~ 17367937 (+)
G373435 NA non-coding upstream 116590 17363622 ~ 17367115 (+)
G373625 NA non-coding downstream 56335 17543384 ~ 17543713 (+)
G373644 NA non-coding downstream 68538 17555587 ~ 17556039 (+)
G373674 NA non-coding downstream 93918 17580967 ~ 17581198 (+)
G373691 NA non-coding downstream 111874 17598923 ~ 17602356 (+)
G373732 NA non-coding downstream 156996 17644045 ~ 17645733 (+)
G372618 LOC105030512 other upstream 601520 16870434 ~ 16882185 (+)
G372373 NA other upstream 745205 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 1262772 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 1688583 15791559 ~ 15795122 (+)
G371182 NA other upstream 2354888 15124290 ~ 15128817 (+)
G373726 NA other downstream 217064 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 580394 18067350 ~ 18177035 (+)
G376320 NA other downstream 2496212 19983261 ~ 19983848 (+)
G377022 NA other downstream 3104431 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 3256535 20508074 ~ 20759255 (+)

Expression


Co-expression Network