G373725


Basic Information

Item Value
gene id G373725
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17714652 ~ 17717041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU424887
TGGTCAAAGAACACATTTATTTCCATCATAAACAGCATTCAGTATTGTACAGTTCAGTAACTTTCATCACCCTTAGCCAATTCATATTTACAACTCAGTCATCAGAATATACTCTTACAGCAAGGGGAATATACAGACAGGGGACCAAATTTAGCATGTGATGAACAAGCATTTTCTTGTTCTCAGAGAAGCATGGCAGATGGCTTTGTTACTTTACCACCTTCTGATCAACACAATCATGTTCATTTTCTAAAGCTGTGTCAAAATAACACATTGATATAAGTAAGAAGGAAATATGACATGGTGTAAAAGGGGGAAAAGAAACAACCTCTAAAAAGAGACCTAATAACATTCTTTAATATAGACTTTCCAGCTACCAAAATATGATATCAAAGCAAAATCCTGTCATTGTTGTATTTACAGTATGGATTTCATAGCAGAAGTTAGTTGTATCTCCATATCAAATCTTCCTGAAAAGATAGTATAAAATGGCATTTAAATATATTCCATTGTACTCATGTCTTACTGCATACTATAGTAGTAGGTCTATAGTTAAGTCCTATAACAGCAACGTGTCTCTGTACCAATATCTATCACTTTAAAACACCACTACCTctgaataacacacacagaaagaaaagCATTTGCTCCCATCTGTATGAATGGAAAATAGTAAATTGTTTATACTTTGAAGAGTGGCATGACCATTATTGCATAGTAAACATTTTCATTTTGGATTCCATCCCTTTGCAGCACAGCAATACATTACTCAACAGAACTTACAAAAAGGCATAGGAAATCACACTATTGAAAGAAGCATACGCTGATAGCACTGAATGTGCTGTTATAGTTTACTACGTGGCTCATCACTTTAGTAACATTATATGGGAAAATAATGCAACAGAGCCTAAATGACGTAGTTCAGTAGTTTCTAAAAGAGACAGCATATTTGCCGTAAAGGAAAAACATTCAGGCAAAGAGGTCAGGAAACTGTTCAAAGTGCTTCATGGCTGGTAAGAAAGGGCAAGGGAACACCCCATCTTTGTTTATAAAAGTACAGTAACTATGGTAGCCtgagtaccagtctgtttgtgctatcatgccaaCTCTCGGTCACTGATTGTCATGCCGAACCTGTTTGActtgacaatgacagcaatggagaaggcaagagcacaaacagatctgggacaaggCAATAACTATGGTGCTCTTGGCCCCAAAGACAATATTTTacttgtatactgtatgtggccCATCAAATACAGCTTTTGCCATTACTGGTATTGTAACAGTTTAAACTACTGTAGTCGTATCTAGACCTGACTTGAAAACAGACTAAAAAAAAATGACCATATGTTGAGGCAACTTAAAACATGGACCCAAACCTCAGATCTAAATTTCTCCATTCATATTAAAGATTCTCTTTTATAGCTACATAAAAGTAACACTACAATGGGAATCTCAGAAAGCCAGTGAGGGCAAATATTCCCTTTGTAGCCACGAGAATGTTGTGCACTTCTTTTGTTGTTCTGTGGGAGAGTGAGTTATGTGAACTCTATTGGGGTTTTGGTTAGCCCACAAGCCATTTAATCCTGTCATCTTATTATACCAAGACTAGGCAATGGGGTCATTTCTTCAACCTAATGTAAGGAGTTTTGTTGCAGTTATCACCAATGTGACCAATATGCTAAAATATTTGTACAATAATTATGTGGTCCTTTATTTCTTACATAGCCTCTATGTATGAAGGTGCCAACTATAGTGGTAGGTTTTGTAGAAGCATCTGATAAATATACACCAAATAGAGGAAGCTAATAAATACCAGTGATTTCAGTTTTGGGGATCGGTCCAAATTAATGCAACCATAATGAGCACATACCAGCTCAGACAGTAGTATAGTATTCCCTCATAGTCTAACCCCATTGCCTATGACAGTGTAAGACTCTTCCTTACTTACCTGGCTTTCTTGAGAACATTTCCCCAAAGTTAGCGTATGCTGTATACACATAGCCAGTGCAGGGCAGGGTAGAAGGGACATCTGTGCAAAAATAATAGTAGACTACCATAGAGTTAAAAGGATAAGTCAGTCTGGGTTTATCGGTCCTTGGTGGTCAGTTTATCAATCAGCTCCTGGAGAGGCACCAACTCCTTCCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424887 True 2159 lncRNA 0.37 2 17714652 17717041

Neighbor

gene id symbol gene type direction distance location
LOC110523353 LOC106569485 coding upstream 471741 17235812 ~ 17242911 (+)
LOC110523352 LOC106569472 coding upstream 497466 17191416 ~ 17217186 (+)
LOC100136246 LOC106569430 coding upstream 566874 17126356 ~ 17147778 (+)
atp5fa1 LOC106569424 coding upstream 588875 17119787 ~ 17125777 (+)
LOC110522812 loxhd1 coding upstream 643113 17019587 ~ 17071539 (+)
tnpo1 LOC106569531 coding downstream 10480 17727521 ~ 17778710 (+)
LOC110523357 LOC106569536 coding downstream 74819 17791860 ~ 17871592 (+)
LOC110523359 LOC106569632 coding downstream 160576 17877617 ~ 17879225 (+)
tmem174 LOC106569163 coding downstream 183452 17900493 ~ 17930164 (+)
btf3 btf3 coding downstream 323662 18040703 ~ 18047631 (+)
G373732 NA non-coding upstream 68919 17644045 ~ 17645733 (+)
G373691 NA non-coding upstream 112296 17598923 ~ 17602356 (+)
G373674 NA non-coding upstream 133454 17580967 ~ 17581198 (+)
G373644 NA non-coding upstream 158613 17555587 ~ 17556039 (+)
G373625 NA non-coding upstream 170939 17543384 ~ 17543713 (+)
G373730 mol1a non-coding downstream 274 17717315 ~ 17718267 (+)
G373727 NA non-coding downstream 1792 17718833 ~ 17722409 (+)
G373774 NA non-coding downstream 9204 17726245 ~ 17726487 (+)
G373775 NA non-coding downstream 9531 17726572 ~ 17726779 (+)
G373786 NA non-coding downstream 38099 17755140 ~ 17755583 (+)
G373726 NA other upstream 6895 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 832467 16870434 ~ 16882185 (+)
G372373 NA other upstream 976152 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 1493719 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 1919530 15791559 ~ 15795122 (+)
arhgef28a LOC106568988 other downstream 350402 18067350 ~ 18177035 (+)
G376320 NA other downstream 2266220 19983261 ~ 19983848 (+)
G377022 NA other downstream 2874439 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 3026543 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 other downstream 3114217 20831111 ~ 20842676 (+)

Expression


Co-expression Network