G373790


Basic Information

Item Value
gene id G373790
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17778908 ~ 17780141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU424973
aactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtacgtcgcttggggtatgtctctatcagttttgcacatcgagagactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcaggatgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagtttaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctctgggagctgtagatctctgcagttcatccagagtgatcatgtgcctcttggctgcatctctgatcaatcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttc
>TU424968
tgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcaggatgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagtttaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctctgggagctgtagatctctgcagttcatccagagtgatcatgtgcctcttggctgcatctctgatcaatcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagct
>TU424967
ccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcaggatgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagtttaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctctgggagctgtagatctctgcagttcatccagagtgatcatgtgcctcttggctgcatctctgatcaatcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagct
>TU424971
ccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcaggatgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagtttaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctctgggagctgtagatctctgcagttcatccagagtgatcatgtgcctcttggctgcatctctgatcaatcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacgaagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcac
>TU424962
gcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctctgggagctgtagatctctgcagttcatccagagtgatcatgtgcctcttggctgcatctctgatcaatcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagct
>TU424970
gcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctctgggagctgtagatctctgcagttcatccagagtgatcatgtgcctcttggctgcatctctgatcaatcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacgaagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424973 False 1054 lncRNA 0.43 1 17778908 17779961
TU424968 False 605 lncRNA 0.44 1 17779283 17779887
TU424967 False 500 lncRNA 0.44 1 17779388 17779887
TU424971 False 754 lncRNA 0.43 1 17779388 17780141
TU424962 False 319 lncRNA 0.43 1 17779569 17779887
TU424970 True 573 lncRNA 0.43 1 17779569 17780141

Neighbor

gene id symbol gene type direction distance location
tnpo1 LOC106569531 coding upstream 198 17727521 ~ 17778710 (+)
LOC110523353 LOC106569485 coding upstream 535997 17235812 ~ 17242911 (+)
LOC110523352 LOC106569472 coding upstream 561722 17191416 ~ 17217186 (+)
LOC100136246 LOC106569430 coding upstream 631130 17126356 ~ 17147778 (+)
atp5fa1 LOC106569424 coding upstream 653131 17119787 ~ 17125777 (+)
LOC110523357 LOC106569536 coding downstream 11719 17791860 ~ 17871592 (+)
LOC110523359 LOC106569632 coding downstream 97476 17877617 ~ 17879225 (+)
tmem174 LOC106569163 coding downstream 120352 17900493 ~ 17930164 (+)
btf3 btf3 coding downstream 260562 18040703 ~ 18047631 (+)
arhgef28a LOC106568988 coding downstream 287209 18067350 ~ 18177035 (+)
G373788 NA non-coding upstream 13451 17764702 ~ 17765457 (+)
G373786 NA non-coding upstream 23325 17755140 ~ 17755583 (+)
G373775 NA non-coding upstream 52129 17726572 ~ 17726779 (+)
G373774 NA non-coding upstream 52421 17726245 ~ 17726487 (+)
G373792 NA non-coding downstream 6396 17786537 ~ 17786751 (+)
G373796 NA non-coding downstream 8991 17789132 ~ 17789428 (+)
G373797 NA non-coding downstream 9375 17789516 ~ 17789847 (+)
G373833 NA non-coding downstream 103209 17883350 ~ 17887537 (+)
G373848 NA non-coding downstream 132339 17912480 ~ 17954790 (+)
G373726 NA other upstream 71151 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 896723 16870434 ~ 16882185 (+)
G372373 NA other upstream 1040408 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 1557975 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 1983786 15791559 ~ 15795122 (+)
G376320 NA other downstream 2203120 19983261 ~ 19983848 (+)
G377022 NA other downstream 2811339 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 2963443 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 other downstream 3051117 20831111 ~ 20842676 (+)

Expression


Co-expression Network