G374287


Basic Information

Item Value
gene id G374287
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18175629 ~ 18181060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU425535
ATAAAGGCACTGAAATATACACATAAAAGTAATTTGCTGTCCAACATAACCATTGTGGTGTTTTATGCAGATGAAGCTACCTATTACACTACCTGGATACTTATTCTCTATATTATGTACTACTATTCACCAGAGCCCCATAGGCCATGGTcaaacactatactgtataggaaatagggtatcatttgggatTCCCCCTACATGGTCCTTTAGGTCTACTGTCTTATTTGTGTTGTGTTTTTAATGGTAGCTGTGGGACAGCTAAAGACTGACTTTCAGGACGTCAAAGGCCATTAATAAACAAAACAACACGTTGGTAGTAAAGTAGCACATGAATATTCAAGTACAATGTTAGAGCTCTGAGTAGAAAGCAAGGTTACCGTTTAGGTGCTTAGAAGAGTCATTCCATCAGTCATCTTTCAACCATAGGCTACTACCCAAACATGATAGCATTGCTATGCATCATATTTTGAAAAAATATGTGATGCATCACAATATGATGCATATAAACTGACACCAGGCTGACTACCCAACTCCTACTACAATGTGATGCATATAAATTCATACCAGGCTGACTACCCAACTCCTACTACAATGTGATGCATATAAATTCATACCAGGCTGACTACCCAACTCCTACTACAATGTGATGCATAAAACCAGTTGGCGGTCGGTGTCGTTTAAGATAAGGGAGGACGCACATTTTTTCTAtgggcatggccttatttctattacagcatactggatgactgtcattcatattccactcacccagctcaatgtaacattgaaaGCTTTAGGCTAATACACATTATACTGAAATGTTCCCTATACCATCATGAGGTTGccacaacctagcctatgaagtTTAAAACatacactatactgtatatactgaagtatgtggacactccttcaaattagtggattcggctatttcagccacacctgctgCTGACaaatgtataaaatcgagcacacagccatgcaatctccatagacaaacattggccgtagaatggccttaatggagagctcagtgacattcaatgtAGCACCATCctagcaccgtcataggatgccaccttcccaacaaaTCAGTTCCAAcaaatttctgccatgctagagctgccccagtcaactgtaagtcctgttattgtgaagtggaaacatcaacggctcagccacgaagtcgtaggccacacatgctcacagaatgggaccacagagtgctgaagtgcataaaaatcatctgtcctcggttgcaaaactcactaccgagttacaaactgcctctggaagcaacgtcagcacaataattgtttgttgggagctttatgaaatgggtttccatggctgagcatcagcacacaagcctaagatcatcatgcgcaatgccaagcatcggctggagtggtgtaaagctcgcagccattgaactctggagcagtggaaatgcgttctctgcaGTGATgactcacgcttcaccatctggcagttatacagacgaatctgggtttggcggatgccaggagaacgctacctgccccaatgcatagtgccaactgtaaagttgggtggaggaggaataatgggctggggctgtttttcgtggttccggctaggccccttagtttcagtgaagggaaatcttaacgctacagcatgcaatgacattctagacgattctgtgcttccaactttgtgacaacagtttggggaaggccctttcctgtttcagcatgacaataccccgtgcacaaagcaaggtccatatagaaatggtttgtcgagattggtgtggaagaacttgactggcctgtacagagccctgacctcaaccccatcaaacacctttgggatgaattggaacaacAACTGCGAGCCAGGTTTAATCAttcaacatcagtgcctgacctcactaatgctcgtggatGAATGGAAAAAAGTCTCTGCAgcattgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcagcaaaggggggaccaactccatattaatgcccatgattttggaatgagatgttcaataagcagatgtccacatacttttggtcatgtagcgtAGGTGTACAGGTCGAGAGAAagatttgagtaatcaaggtgacagaaaGTGACACATTTAATACCGCACGcttttgcctgcatctagctgatctagggtgtaatcattagtccaacagttgcaaacaaatTCAGGTATTTTTATCCATGTTTCATTCCGTTTGCTTACATAATCGGAGGAATGAATACACGCATCCCTgatcacacataaacacagttcactttcatagcagccacatacaaacagcatgattacTTTACttgttgtattccttctcacatctacgcactctcctcctctcaccttttcctttCACTTGTGGACTGCAGTGCACAACACaccagctgtctgtgaccaggcaaaaaaaaaatccaagccaaaccttcatattatAACcactaactgctacacacagcttacatcattgtcaccatagtATCTAATGTAATCAATACGGCTACGAGAACTAACGCGTTACTAAACTCGGGAGAATcacgcagtacagtgtacagcaagcagtttagcagttacaccagtgggccccagtggcaataaattaataaaaccaaaagtttACGTTGACTTGGAAGAATTCCAGttttggatagtcatagccagctaactaacatagcatccctccctgtttgagctgggtgtttgagtaggctaaactagctagctgcattcgctagctaagtaagtgaaagtgaaaaaattaCAACGAgaaatatagctctctctcttgcttctccttcatttttgaagaaattaatttgttaaaaactggTCAGCTATTGTCTTTCTcgttgagtcaactactcaccacaattTATGCACTgctgtgctagctagctgtagcttatgctttcagcactagattcattctctgatcctttgattgggtagacaacatgtcagttcatgctgcaagagctttgATAGATTGGAGGACATTCTCCGGAAGTTGTcattattactgtgtaagtctataaGTTTTGTATTGGTGtaattcctctcccctgtaactattccccaggttgtagctgtaaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425535 True 3156 lncRNA 0.42 3 18175629 18181060

Neighbor

gene id symbol gene type direction distance location
ankra2 LOC106569021 coding downstream 115659 18052970 ~ 18059970 (-)
foxd1 LOC106569011 coding downstream 140988 18032820 ~ 18034641 (-)
LOC110523358 NA coding downstream 316032 17857501 ~ 17859597 (-)
LOC110523355 mol1a coding downstream 453026 17714649 ~ 17722603 (-)
dck dck coding downstream 461734 17703920 ~ 17713895 (-)
enc1 LOC106568903 coding upstream 202054 18383114 ~ 18397338 (-)
LOC110523369 LOC106568861 coding upstream 325249 18506309 ~ 18539569 (-)
LOC118964773 NA coding upstream 399209 18578378 ~ 18581454 (-)
LOC110523371 LOC106568849 coding upstream 406550 18587610 ~ 18589578 (-)
LOC110523372 LOC106568827 coding upstream 408594 18589654 ~ 18599366 (-)
G374288 NA non-coding downstream 1358 18173724 ~ 18174271 (-)
G374186 NA non-coding downstream 124810 18048950 ~ 18050819 (-)
G374210 NA non-coding downstream 127320 18048062 ~ 18048309 (-)
G374184 LOC100194627 non-coding downstream 127995 18040725 ~ 18047634 (-)
G374192 NA non-coding downstream 164110 18011172 ~ 18011519 (-)
G374290 NA non-coding upstream 801 18181861 ~ 18182063 (-)
G374317 NA non-coding upstream 23324 18204384 ~ 18204620 (-)
G374318 NA non-coding upstream 25491 18206551 ~ 18206912 (-)
G374329 NA non-coding upstream 38877 18219937 ~ 18220204 (-)
G374341 NA non-coding upstream 49604 18230664 ~ 18230898 (-)
G374189 NA other downstream 172459 18002820 ~ 18003170 (-)
LOC110523354 LOC106569496 other downstream 654142 17483696 ~ 17521507 (-)
G373228 LOC106569424 other downstream 1049822 17124037 ~ 17125807 (-)
LOC110523341 LOC106569324 other downstream 1233438 16909582 ~ 16942359 (-)
G372123 NA other downstream 2194414 15978502 ~ 15981215 (-)
G374786 NA other upstream 377080 18558140 ~ 18559167 (-)
G377800 NA other upstream 2513036 20694096 ~ 20694708 (-)
G377809 LOC106568602 other upstream 2523553 20704613 ~ 20705140 (-)
G377991 NA other upstream 2848398 21029458 ~ 21029783 (-)
G378359 NA other upstream 3610602 21791662 ~ 21791993 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_03321589_03328761 GHRHR2 coding CI01000047 null 3319692 ~ 3328761 (-)