G374120


Basic Information

Item Value
gene id G374120
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18179542 ~ 18181098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU425341
TAAacttcataggctaggttgtggCAACCTCATGATGGTATAGGGAACATTTCAGTATAATGTGTATTAGCCTAAAGCtttcaatgttacattgagctgggtgagtggaatatgaatgacagtcatccagtatgctgtaatagaaataaggccatgcccaTAGAAAAAATGTGCGTCCTCCCTTATCTTAAACGACACCGACCGCCAACTGGTTTTATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGTAGGAGTTAGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTAGGTAGTCAGCCTGGTATCAATTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTATCAATTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGTGTCAGTTTATATGCATCATATTGTGATGCATCACATATTTTTTCAAAATATGATGCATAGCAATGCTATCATGTTTGGGTAGTAGCCTATGGTTGAAAGATGACTGATGGAATGACTCTTCTAAGCACCTAAACGGTAACCTTGCTTTCTACTCAGAGCTCTAACATTGTACTTGAATATTCATGTGCTACTTTACTACCAACGTGTTGTTTTGTTTATTAATGGCCTTTGACGTCCTGAAAGTCAGTCTTTAGCTGTCCCACAGCTACCATTAAAAACACAACACAAATAAGACAGTAGACCTAAAGGACCATGTAGGGGGAatcccaaatgataccctatttcctatacagtatagtgtttgACCATGGCCTATGGGGCTCTGGTGAATAGTAGTACATAATATAGAGAATAAGTATCCAGGTAGTGTAATAGGTAGCTTCATCTGCATAAAACACCACAATGGTTATGTTGGACAGCAAATTACTTTTATGTGTATATTTCAGTGCCTTTATTTATTAATTGTAGATTTATATAGTTGTTTTACATACTC
>TU425342
TAAacttcataggctaggttgtggCAACCTCATGATGGTATAGGGAACATTTCAGTATAATGTGTATTAGCCTAAAGCtttcaatgttacattgagctgggtgagtggaatatgaatgacagtcatccagtatgctgtaatagaaataaggccatgcccaTAGAAAAAATGTGCGTCCTCCCTTATCTTAAACGACACCGACCGCCAACTGGTTTTATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGTAGGAGTTGGGTAGTCAGCCTGGTATCAATTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGTAGGAGTTAGGTAGTCAGCCTGGTATGAATTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGGTGTCAGTTTATATGCATCACATTGTAGTAGGAGTTAGGTAGTCAGCCTGGTATGAATTAAATGCATCACATTGTAGTAGGAGTTAGGTAGTCAGCCTGGTATCAATTTATATGCATCACATTGTAGAAGTAGTTGGGTAGTCAGCCTGTGTCAGTTTATATGCATCATATTGTGATGCATCACATATTTTTTCAAAATATGATGCATAGCAATGCTATCATGTTTGGGTAGTAGCCTATGGTTGAAAGATGACTGATGGAATGACTCTTCTAAGCACCTAAACGGTAACCTTGCTTTCTACTCAGAGCTCTAACATTGTACTTGAATATTCATGTGCTACTTTACTACCAACGTGTTGTTTTGTTTATTAATGGCCTTTGACGTCCTGAAAGTCAGTCTTTAGCTGTCCCACAGCTACCATTAAAAACACAACACAAATAAGACAGTAGACCTAAAGGACCATGTAGGGGGAatcccaaatgataccctatttcctatacagtatagtgtttgACCATGGCCTATGGGGCTCTGGTGAATAGTAGTACATAATATAGAGAATAAGTATCCAGGTAGTGTAATAGGTAGCTTCATCTGCATAAAACACCACAATGGTTATGTTGGACAGCAAATTACTTTTATGTGTATATTTCAGTGCCTTTATTTATTAATTGTAGATTTATATAGTTGTTTTACATACTC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU425341 False 1358 lncRNA 0.39 2 18179542 18181098
TU425342 True 1407 lncRNA 0.39 2 18179542 18181098

Neighbor

gene id symbol gene type direction distance location
arhgef28a LOC106568988 coding upstream 2507 18067350 ~ 18177035 (+)
btf3 btf3 coding upstream 131911 18040703 ~ 18047631 (+)
tmem174 LOC106569163 coding upstream 249378 17900493 ~ 17930164 (+)
LOC110523359 LOC106569632 coding upstream 300317 17877617 ~ 17879225 (+)
LOC110523357 LOC106569536 coding upstream 307950 17791860 ~ 17871592 (+)
LOC110523365 LOC106568911 coding downstream 215230 18396328 ~ 18410126 (+)
LOC110523366 nsa2 coding downstream 234676 18415774 ~ 18422258 (+)
egfl7 LOC106568866 coding downstream 306522 18487620 ~ 18506142 (+)
LOC110523370 fa69b coding downstream 377054 18558152 ~ 18578228 (+)
LOC110523377 LOC106568724 coding downstream 1177173 19358271 ~ 19364089 (+)
G374157 NA non-coding upstream 56927 18121391 ~ 18122615 (+)
G374105 NA non-coding upstream 130334 18048939 ~ 18049208 (+)
G374106 LOC106569011 non-coding upstream 144928 18033872 ~ 18034614 (+)
G374095 NA non-coding upstream 169161 18010112 ~ 18010381 (+)
G374094 NA non-coding upstream 176389 18002824 ~ 18003153 (+)
G374291 NA non-coding downstream 1381 18182479 ~ 18182694 (+)
G374292 NA non-coding downstream 1652 18182750 ~ 18183159 (+)
G374316 NA non-coding downstream 23282 18204380 ~ 18204663 (+)
G374331 NA non-coding downstream 42631 18223729 ~ 18223994 (+)
G374359 NA non-coding downstream 65282 18246380 ~ 18246703 (+)
G373726 NA other upstream 471785 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 1297357 16870434 ~ 16882185 (+)
G372373 NA other upstream 1441042 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 1958609 16218328 ~ 16220933 (+)
G376320 NA other downstream 1802163 19983261 ~ 19983848 (+)
G377022 NA other downstream 2410382 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 2562486 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 other downstream 2650160 20831111 ~ 20842676 (+)
LOC110523400 LOC106568542 other downstream 2927071 21108129 ~ 21160149 (+)

Expression


Co-expression Network