XLOC_023188


Basic Information

Item Value
gene id XLOC_023188
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 41312307 ~ 41316882 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047107
TCAGGGATGATGTTGATGTTCTGTTAAATCAGTGTGCGTTTTGTGAGGATTTCGGGACTCTTACCTTTCCAGAATACTGCGACATTTCTCCTCTGGATTGCGTCCAAACTGGCCACACGTCAGACAGTGAGAGGCCAAAGTTGGACCGGACAATTTATAGTGGCAGCGGCTTCTGGCGGCAACAATGGCAGCTTTAGCGAGTCTGCTGAGCGGGCGGTTTTCCCGCGCGCCTCTGCTGATGCGGAGCTTCACTTCCGACAATGGATTCTGCTTCGCTGGACATTAGTTTGTggagAGAGCCGGAGAGGAGGAGCAGACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047107 True 319 lncRNA 0.53 2 41312307 41316882

Neighbor

gene id symbol gene type direction distance location
XLOC_023187 nub1 coding upstream 9068 41273252 ~ 41303239 (+)
XLOC_023186 NA coding upstream 40673 41270080 ~ 41271634 (+)
XLOC_023185 scn5lab coding upstream 169051 40905100 ~ 41143256 (+)
XLOC_023183 gorasp1b coding upstream 439207 40860320 ~ 40873100 (+)
XLOC_023184 NA coding upstream 441722 40869279 ~ 40870585 (+)
XLOC_023189 NA coding downstream 69743 41386625 ~ 41388639 (+)
XLOC_023190 NA coding downstream 85663 41402545 ~ 41444719 (+)
XLOC_023191 NA coding downstream 116633 41433515 ~ 41435485 (+)
XLOC_023192 CABZ01080380.1 coding downstream 220180 41537062 ~ 41537191 (+)
XLOC_023193 CABZ01044108.1 coding downstream 293186 41610068 ~ 41611201 (+)
XLOC_023182 NA non-coding upstream 506717 40708722 ~ 40805590 (+)
XLOC_023181 NA non-coding upstream 636432 40654101 ~ 40675875 (+)
XLOC_023180 CU929259.2 non-coding upstream 663935 40648256 ~ 40648372 (+)
XLOC_023195 FP101885.1 non-coding downstream 393806 41710688 ~ 41710804 (+)

Expression


Co-expression Network