G374522


Basic Information

Item Value
gene id G374522
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 18559945 ~ 18560162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU425791
gacaatatcctgaggcccattgtcttgcCATTCATCGGCTGCcctcacctcatgtttcagtataataatgcacggccccatgttgcaaggatgtGTATGTACACtcttcctggaagctgaaaatgtcccagttcttccatggtctgcatactcacaagacatgtcacccattgagcaggtttggcatgctctggatcgacatgtatgacagcgtgttc

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425791 True 218 lncRNA 0.48 1 18559945 18560162

Neighbor

gene id symbol gene type direction distance location
egfl7 LOC106568866 coding upstream 53803 18487620 ~ 18506142 (+)
LOC110523366 nsa2 coding upstream 137687 18415774 ~ 18422258 (+)
LOC110523365 LOC106568911 coding upstream 149819 18396328 ~ 18410126 (+)
arhgef28a LOC106568988 coding upstream 382910 18067350 ~ 18177035 (+)
btf3 btf3 coding upstream 512314 18040703 ~ 18047631 (+)
LOC110523377 LOC106568724 coding downstream 798109 19358271 ~ 19364089 (+)
LOC110523383 LOC106568686 coding downstream 939442 19499604 ~ 19512291 (+)
LOC110523391 LOC106568645 coding downstream 1491231 20051393 ~ 20381619 (+)
LOC110523393 LOC106568920 coding downstream 1830368 20390530 ~ 20414156 (+)
LOC110522816 LOC106568602 coding downstream 1947912 20508074 ~ 20759255 (+)
G374518 NA non-coding upstream 2284 18546471 ~ 18557661 (+)
G374517 NA non-coding upstream 13630 18546107 ~ 18546315 (+)
G374492 NA non-coding upstream 72701 18487036 ~ 18487244 (+)
G374491 NA non-coding upstream 73332 18486385 ~ 18486613 (+)
G374490 NA non-coding upstream 75445 18484268 ~ 18484500 (+)
LOC110523370 fa69b non-coding downstream 3901 18558152 ~ 18578228 (+)
G374526 NA non-coding downstream 4923 18565085 ~ 18624713 (+)
G374504 NA non-coding downstream 18523 18578685 ~ 18581458 (+)
G374536 NA non-coding downstream 29487 18589649 ~ 18590768 (+)
G374582 NA non-coding downstream 82430 18642592 ~ 18737468 (+)
G373726 NA other upstream 852188 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 1677760 16870434 ~ 16882185 (+)
G372373 NA other upstream 1821445 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 2339012 16218328 ~ 16220933 (+)
G376320 NA other downstream 1423099 19983261 ~ 19983848 (+)
G377022 NA other downstream 2031318 20591480 ~ 20596863 (+)
LOC110522817 LOC106568462 other downstream 2271096 20831111 ~ 20842676 (+)
LOC110523400 LOC106568542 other downstream 2548007 21108129 ~ 21160149 (+)

Expression


Co-expression Network