Item | Value |
---|---|
gene id | XLOC_023194 |
gene name | lama1 |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007135.7 |
NCBI id | CM002908.2 |
chromosome length | 42172926 |
location | 41690545 ~ 41784173 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
lama1 | Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including camera-type eye development; nervous system development; and notochord cell development. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane. Is expressed in several structures, including central nervous system; eye; immature eye; pronephros; and trunk. Orthologous to human LAMA1 (laminin subunit alpha 1). |
id | name | namespace |
---|---|---|
GO:0045995 | regulation of embryonic development | biological_process |
GO:0043010 | camera-type eye development | biological_process |
GO:0030155 | regulation of cell adhesion | biological_process |
GO:0001764 | neuron migration | biological_process |
GO:0048514 | blood vessel morphogenesis | biological_process |
GO:0031290 | retinal ganglion cell axon guidance | biological_process |
GO:0003412 | establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis | biological_process |
GO:0009887 | animal organ morphogenesis | biological_process |
GO:0009888 | tissue development | biological_process |
GO:0002088 | lens development in camera-type eye | biological_process |
GO:0048854 | brain morphogenesis | biological_process |
GO:0048593 | camera-type eye morphogenesis | biological_process |
GO:0001568 | blood vessel development | biological_process |
GO:0007634 | optokinetic behavior | biological_process |
GO:0061303 | cornea development in camera-type eye | biological_process |
GO:0061053 | somite development | biological_process |
GO:0008045 | motor neuron axon guidance | biological_process |
GO:0007409 | axonogenesis | biological_process |
GO:0007411 | axon guidance | biological_process |
GO:0001654 | eye development | biological_process |
GO:0007420 | brain development | biological_process |
GO:0060034 | notochord cell differentiation | biological_process |
GO:0060035 | notochord cell development | biological_process |
GO:0030334 | regulation of cell migration | biological_process |
GO:0030903 | notochord development | biological_process |
GO:0007155 | cell adhesion | biological_process |
GO:0005604 | basement membrane | cellular_component |
GO:0005102 | signaling receptor binding | molecular_function |
GO:0005201 | extracellular matrix structural constituent | molecular_function |
id | description |
---|---|
ZDB-GENE-060118-1 | Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including camera-type eye development; nervous system development; and notochord cell development. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane. Is expressed in several structures, including central nervous system; eye; immature eye; pronephros; and trunk. Orthologous to human LAMA1 (laminin subunit alpha 1). |
ensembl_id | ENSDARG00000102277 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00045921 | True | 9581 | mRNA | 0.55 | 63 | 41690545 | 41784173 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_023193 | CABZ01044108.1 | coding | upstream | 79344 | 41610068 ~ 41611201 (+) |
XLOC_023192 | CABZ01080380.1 | coding | upstream | 153354 | 41537062 ~ 41537191 (+) |
XLOC_023190 | NA | coding | upstream | 245826 | 41402545 ~ 41444719 (+) |
XLOC_023191 | NA | coding | upstream | 255060 | 41433515 ~ 41435485 (+) |
XLOC_023189 | NA | coding | upstream | 301906 | 41386625 ~ 41388639 (+) |
XLOC_023196 | NA | coding | downstream | 2372 | 41786545 ~ 41790539 (+) |
XLOC_023197 | TMEM200C | coding | downstream | 131705 | 41915878 ~ 41917794 (+) |
XLOC_023198 | epb41l3a | coding | downstream | 147412 | 41931585 ~ 41987332 (+) |
XLOC_023199 | zbtb14 | coding | downstream | 204935 | 41989108 ~ 41994676 (+) |
XLOC_023200 | top1mt | coding | downstream | 220467 | 42004640 ~ 42018243 (+) |
XLOC_023188 | NA | non-coding | upstream | 373663 | 41312307 ~ 41316882 (+) |
XLOC_023202 | NA | non-coding | downstream | 291802 | 42075975 ~ 42076966 (+) |
XLOC_023203 | NA | non-coding | downstream | 307034 | 42091207 ~ 42093362 (+) |
XLOC_023206 | NA | non-coding | downstream | 338363 | 42122536 ~ 42123841 (+) |
XLOC_023207 | NA | non-coding | downstream | 339948 | 42124121 ~ 42125758 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000140_00379438_00414445 | NA | coding | CI01000140 | null | 379438 ~ 414451 (+) |
bowfin (Amia calva) | AMCG00019256 | NA | coding | CM030124.1 | CM030124.1 | 11283571 ~ 11328359 (-) |