G375477


Basic Information

Item Value
gene id G375477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19353291 ~ 19353588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU426885
AAGTAAAATGTTGTATTCATTCTCAGATCCTTAAGAGGAAAATGTTGTGTTGTACCAACAGAAACTTCAATCCAACCTAAATAAAGAAGTTTCAGCATGTATTTGAGGATTTGGCAAAACTGTGCCATGAAACCATAAAACACTTCTAATTAAGGTCTACAACGAGATCTACATCACAGAAGGTGGATGTGGAGAGGTCAATAGTGTACATGAGGCAAGACGGCTCGAGACGACACATTCCAAGAATTCAGATAGACTAGAGACATCAATAACTATTTATTTCAACCCACACCTGGAC

Function

NR:

description
NLR family CARD domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU426885 True 298 lncRNA 0.38 1 19353291 19353588

Neighbor

gene id symbol gene type direction distance location
LOC110523370 fa69b coding upstream 775063 18558152 ~ 18578228 (+)
egfl7 LOC106568866 coding upstream 847149 18487620 ~ 18506142 (+)
LOC110523366 nsa2 coding upstream 931033 18415774 ~ 18422258 (+)
LOC110523365 LOC106568911 coding upstream 943165 18396328 ~ 18410126 (+)
arhgef28a LOC106568988 coding upstream 1176256 18067350 ~ 18177035 (+)
LOC110523377 LOC106568724 coding downstream 4683 19358271 ~ 19364089 (+)
LOC110523383 LOC106568686 coding downstream 146016 19499604 ~ 19512291 (+)
LOC110523391 LOC106568645 coding downstream 697805 20051393 ~ 20381619 (+)
LOC110523393 LOC106568920 coding downstream 1036942 20390530 ~ 20414156 (+)
LOC110522816 LOC106568602 coding downstream 1154486 20508074 ~ 20759255 (+)
G375445 NA non-coding upstream 42998 19309904 ~ 19310293 (+)
G375444 NA non-coding upstream 43983 19308826 ~ 19309308 (+)
G375421 NA non-coding upstream 100047 19252927 ~ 19253244 (+)
G375374 NA non-coding upstream 190710 19162252 ~ 19162581 (+)
G375369 NA non-coding upstream 193757 19159315 ~ 19159534 (+)
G375481 NA non-coding downstream 2286 19355874 ~ 19356118 (+)
G375485 NA non-coding downstream 22701 19376289 ~ 19376554 (+)
G375486 NA non-coding downstream 23858 19377446 ~ 19377709 (+)
G375488 NA non-coding downstream 25561 19379149 ~ 19379375 (+)
G375491 NA non-coding downstream 30021 19383609 ~ 19383849 (+)
G373726 NA other upstream 1645534 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 2471106 16870434 ~ 16882185 (+)
G372373 NA other upstream 2614791 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 3132358 16218328 ~ 16220933 (+)
G376320 NA other downstream 629673 19983261 ~ 19983848 (+)
G377022 NA other downstream 1237892 20591480 ~ 20596863 (+)
LOC110522817 LOC106568462 other downstream 1477670 20831111 ~ 20842676 (+)
LOC110523400 LOC106568542 other downstream 1754581 21108129 ~ 21160149 (+)

Expression


Co-expression Network