XLOC_023196


Basic Information

Item Value
gene id XLOC_023196
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 41786545 ~ 41790539 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047108
CACCCATTGACAGTAAGGATTAGCGTGGTAAACGTCTAGTAGATATGCGTCTGGATCCAGGCAGCGCTCGCCTGCAGTCAACAAAAACAAACGATTAATACATCATTTACACACCGTGATATACACTGAAATATTTctgtattagggctgcatgatattggaaaatctgacattgcgatagtTTATTTTGCTGTAATATGAATATAATCTCGCCAGATGATTTGAGTAGCTCTATTGGGACTGaagatttaattaaattagatcgactgggatgatcaagtctttttctatgcatataataaattcataaaatcatatataacataatatttataacacaatagaacaaaaaattaaattaaattaatttataataaataaaaataacaaagtaaatttaaaataacatggtcatcattctatgaataaaatatataacaatatatttatattttagcattgaataatattaaaatataatgtaatataatattaaatataatatttaatctaatcctgcgatgtcactattgcggatacacacattgcgaaatcgatgctcaaacgatatattgtttaACCCTAATCTGCAAATTATCACTTGTAGCTATAACTTTGACTTGGCATatattgtaatattaaaaataacgaACCTGCGTGTGgaaaagacgcgatatgtgaatGGCCCGCTGCTATGGTTAATCCAGAGTGCGTATTAGCCTTGGTGTAGCTATAAGCTCTGAACTGTTAACTTTTGCACAGGTGgcgtaactttgtttagttgtagCAGTTTTATTCTGTGCAACAGAAATATGGCATTGAGAAGCTTTTATGATTAAGTGTACAAATGTTATCAGCTGCTCGCGCCATtcgcttaatgtcaggtgactcacgctctgcgcggccttcaactgcagctcgtactatattgaacagacgcacgtaaCTTCATAAATAAAGCGGCCGTTTTTTCGACTTAACTAAGATTATTTTTGATgttttggtcacactatttggagggccggatCAAATTGCCTCGTGGGCCAAGTTGAATAGCCCTGAACTACGAAGACGATATTTTCGCGTGTATGTAACATAGTAAACAATGTAACCAATACGTCTCCGGAAGAAACGGTGACGTAAGCAACTgaataaccatccataattcaacactGAACGCGCTCTATGGGATGTTTTTCAATTCACCCTTACCTTTCATAATAAATGTACAGCAATGAATGCGTGAGTGTTTTATTACGATACTAACTACAGTATGTACTTTTTATCTAGCGCACATACAgtgtttataaaaatgtaataatggcTAAATGTTAACTAATACTTTACATGTGCGTTTCACAATAAACTTTTTCTTACAATAAATTATTCTGCTAGGTTTACGCCACGTGTAAGATTGCGTCACTCCCTCTAAATTAATCGCGGGATATTTTTTGACTTAGTTTGGATTGAACTTTTTAACTTGAGCGGAAGACGTGACTGTGGCAAATGCAGAAATTCGCATCTATTTACACGTTTATCTGTTCTTTTTACACATTTATCACGTTAATCTACTTGCGTGAATACTTAAAAGTTACATTCGgtgttaaaaatgtacattatttactatacattattatttacatgtattGTTAATCTTCAATAAATTagatttactgttaaaaaaaacacatcatgtGACTCTTTGATGCTATCTTAGTTGACAGATATCGAAATATAATGTTGATGATTTGCTTGCGATATATCGTCTGTCTCAGAACTTCTGTTATTATATCACTATTGTCGACAAAATATTGTGATAGTATTGTATTGTAAGTTAACCTGTGATTCACACCCCTAGTATTGCTTTATCGTAAATGTATCGTATGTAATAATATTGCGCTCACCGATGTTTCCTCCGACCTCGAACAGAAGCTGTTTCTGTCGTCGACCGCCACTCCGCGATCCATGTCTGCAAACACATTCACTGGTTAACGTAGGTTATATGATGGTATACGTTAAACCATGGTGTTTTTCGTTCACTAACCCTTTCTCTGTGTCAAAATGCGCAGTGATGTCTCTGGCTTTCATATCGGTGCTCAGCTGAATCGCCATTGAAACTTTGGCGTGAAGCGGCGCATGAACTCTGATGACCCCGTCACGAAGATCCTTCACCTGAGAGAGaatgtgaattattattaatactgttgATAAATCAGGCAGTTATTGTGATAGCCTGTTTCTGCTATGGAATAAAAACCTAAATGCAACCTTGTTTGTCATTTTAGCTTAATTTAATCGCAAGATAGCAAGACATCAAATAAGAAACGCAATAAGTCTTATAATATCACTTCCTCCAGAATTGTTTATATAAAGTTTTTCTACCGTTTTACTTAAGAATTGTGAgataaaactattttgttgaaTTAAATGCCATAATTGTGAGATCAAAAATTTGGGAACAcctttttagttgttttatttttatgttgaaaaCATTAAGTTCTCAACGAATGTGCATCTATTAACTTAATAATAGTTTTATGAATGGAACCCTTCCTTatttaagtacaccttactagtaccgggtcggacccctttgccttcagaactcccTTAATTCttggtggcagagattcaactaacgagcagctggacaggtgtacctaataaagtggccggtgagtgtgtatagcTGAGAATAAGTGAATGGAAGTGTTTAATTTGTGGTTTATTCgaaaataacaacaacagttTTATGTTTTCCATGTTCCAATGTTTGTTTAAAACCCACCAAAAAGCCTCATATTACAAACAGGCTCATTACATAGGTGCTCGGTCTTCACACACTACAgtcaatatttgtattatttatttttaaacctgATGCGTTTTAAAATGCGTTTCACTTCCTGTTCTTGCTTCAtccattaaaataataatcatattacgATTTAATCAATTATgacctttcattttttttgtaacGCTAATGAAAGTCTATGAAAGGCGCGCGTTTCTCGCGGCACAACACCGGCCCTCCTTTTGGGACTGTTCACCGTTTCTGTAACACTCCGCTAGCAGATTCGCGCCAAAATGAATACAAATCAGTCACGCATTAATTCGGATTATATTTaaaaagcgattgattaaagacGAAAACAAGGCGTTCACAACAGATACAGTCATTAAAAGATCAACAATCTCACAAGGCTCATCGGCGACTGAGTATTATCCCACTGAATATTATACGaatataatattcatatataatatatgaatattaAATCACCTGGAGGACGTTATAACCTCTAAATACACCACATTCAGCAGGAAACGGACCTTTCTGAAGAAGGAAAACACTACAGACAAACGCAGGTATGTTAGGTTAATCACTTTCTTTCTCTTATGATGGATAATCCGACTCATACTGACTGATTTAAGAGATGTTTAGTGGTCGTTTCACACAAAACGTGCTCGAGTGACGCAAAAGATAACGCTTAATACCGTGTTAATAACCTTTATAACGCGTCTGGGGAACTGAGTATTTATTGACGTCAATGAATAACCGCTGAACCTTTATGAACAGCATGTGAAAATGTGCTTTCAGACGCAGAGATGAGCTGTAGTCAAATatatctgaataaataaatatgtttaagaatCTATAATAACGTACTGGTGTAGTATAGTAGTTTTTATCATTAGATAGCAGTCTGCTCATTAAATGCTAAAAACCTATTCAATTGATTTGATGCTATAACTTAGTACTTATTAAGTGCGTACTTCACCGGTTATATCAATACTGCTGCCTAGTATGCCAGTTATAACACTCTATATTATTTTGATATAATCAGAAATGTTAGTAGGCCTGCTGGTAAAAATATTCTGGAAGTAAAACGTTAATAATGTATGTTCAGGTTTTGGTTCATAATCATGAATCAACATCTGTCGTTTTTCTGCAAAAtaattgcaatatgaatacaatgtTACCTCAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0035295 tube development biological_process
GO:0006396 RNA processing biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047108 True 3995 lncRNA 0.35 1 41786545 41790539

Neighbor

gene id symbol gene type direction distance location
XLOC_023194 lama1 coding upstream 2372 41690545 ~ 41784173 (+)
XLOC_023195 FP101885.1 coding upstream 75741 41710688 ~ 41710804 (+)
XLOC_023193 CABZ01044108.1 coding upstream 175344 41610068 ~ 41611201 (+)
XLOC_023192 CABZ01080380.1 coding upstream 249354 41537062 ~ 41537191 (+)
XLOC_023190 NA coding upstream 341826 41402545 ~ 41444719 (+)
XLOC_023197 TMEM200C coding downstream 125339 41915878 ~ 41917794 (+)
XLOC_023198 epb41l3a coding downstream 141046 41931585 ~ 41987332 (+)
XLOC_023199 zbtb14 coding downstream 198569 41989108 ~ 41994676 (+)
XLOC_023200 top1mt coding downstream 214101 42004640 ~ 42018243 (+)
XLOC_023201 top1mt coding downstream 283604 42074143 ~ 42075487 (+)
XLOC_023191 NA non-coding upstream 351060 41433515 ~ 41435485 (+)
XLOC_023189 NA non-coding upstream 397906 41386625 ~ 41388639 (+)
XLOC_023202 NA non-coding downstream 285436 42075975 ~ 42076966 (+)
XLOC_023203 NA non-coding downstream 300668 42091207 ~ 42093362 (+)
XLOC_023206 NA non-coding downstream 331997 42122536 ~ 42123841 (+)
XLOC_023207 NA non-coding downstream 333582 42124121 ~ 42125758 (+)

Expression


Co-expression Network