G375871 (LOC106568667)


Basic Information

Item Value
gene id G375871
gene name LOC106568667
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19621070 ~ 19622673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU427337
CTTTTCATCATCAGTATTTGATCCAGTATATATTTAGTGTGCTTTATAGTCTTATTGATGGCTGCCATCAATAGCTGTGCTAGTTTCTCCAATAATAATCAACAGCACCATCAACAAAATCACACGATTTTGGGTGCGAGCACACATGCAGAGGGAATACATCATTACATTTCCAGGCCTTGTTTTCTACTTTGTTTACCGGGCTATCATCTAAAACCAATCATATCCTATTCCTGGTCTGACAAAGTTCTGTCTGAAATAGAAAGGTCCCATTTCTAGCGATAGATTTCTATAATTCAGTAAGTGTTCCAGCCATTGTTACCCGCATGGAGAAAGCCAACAGGTtgattgtttttgttattttccaTTTGACAGATCATTTGctcagagagaaaagagacagagggaaagagagaggcacATGTAGAATCCCAAAATGAATGACTATGCGTGCAGTTGAACCCTATGGAGGGCAAATTGACTAATTGTTAATTATGGAAGGCTGATGAAAATTGCTCAAGTGTAAATGAAGGTGTCACATTGGAGAGGCACTGTAGTTCAGACACACCTACCCCCTTAGTGGACAATCAGCATTATTTTAAACTTGACAGGACACACTGGGCTGTTGAACAGGCAGCTATAGCGGACTTATTCACTGATTAATTACACTGCAGAGGTTGGAAATATTACAGGGGGAAATGAAATGAGAATGATCACTGCTATGGCGACAGGGCAGGGGTAATGTGGAGTCGGGAGCGGGATGAGCTACGGAAAGATAAGTAAAGCCAAAAAGGAGTGAGGGGGTAGAACTAACGGAAAGAGCATGATGATGGTAGAAGTTCAAAGAGGGCAAGGAAAACTACCTATGACTGGACAGTAGTATTGAAGTGGTATCAGCCAGGCCAGAAAAGTATAGTGGAGAGTTTGAaaaatatagagacaaagtggtaGAACTGTGTGACCGCACTGCAGTAGATGGGGATGCACAACCACAGTATTGTCCACTAACATCAATAAA
>TU427338
GTTTCTCCAATAATAATCAACAGCACCATCAACAAAATCACACGATTTTGGGTGCGAGCACACATGCAGAGGGAATACATCATTACATTTCCAGGCCTTGTTTTCTACTTTGTTTACCGGGCTATCATCTAAAACCAATCATATCCTATTCCTGGTCTGACAAAGTTCTGTCTGAAATAGAAAGGTCCCATTTCTAGCGATAGATTTCTATAATTCAGTAAGTGTTCCAGCCATTGTTACCCGCATGGAGAAAGCCAACAGGTtgattgtttttgttattttccaTTTGACAGATCATTTGctcagagagaaaagagacagagggaaagagagaggcacATGTAGAATCCCAAAATGAATGACTATGCGTGCAGTTGAACCCTATGGAGGGCAAATTGACTAATTGTTAATTATGGAAGGCTGATGAAAATTGCTCAAGTGTAAATGAAGGTGTCACATTGGAGAGGCACTGTAGTTCAGACACACCTACCCCCTTAGTGGACAATCAGCATTATTTTAAACTTGACAGGACACACTGGGCTGTTGAACAGGCAGCTATAGCGGACTTATTCACTGATTAATTACACTGCAGAGGTTGGAAATATTACAGGGGGAAATGAAATGAGAATGATCACTGCTATGGCGACAGGGCAGGGGTAATGTGGAGTCGGGAGCGGGATGAGCTACGGAAAGATAAGTAAAGCCAAAAAGGAGTGAGGGGGTAGAACTAACGGAAAGAGCATGATGATGGTAGAAGTTCAAAGAGGGCAAGGAAAACTACCTATGACTGGACAGTAGTATTGAAGTGGTATCAGCCAGGCCAGAAAAGTATAGTGGAGAGTTTGAaaaatatagagacaaagtggtaGAACTGTGTGACCGCACTGCAGTAGATGGGGATGCACAACCACAGTATTGTCCACTAACATCAATAAACTGAGGAGGATGCCGCCTACACttctgtgtgtgtcccaaatggaaccacattccctacatagtgcactacttttgaccaaagctctACAGGCActagtcaaaagtaatgcactatagggtgccatttgggacagactaCATCTCCCCTAAAGCATTCAAATATCTGAGACCTACCCACCATCTGAACTTCTTATGTCTAATTCCAATTTTCCTGCTGTAAGAAACATGGTAGACCCTCTACTAAATCATTGAGGTTGAGTGAACGAGTGTGCGCACTTCAGGGAGGGAGTAAAATGAATGGAATACGACTTTAGTGTCCTCCTGGTGCACAGTCCTAGTGTCCCTCTATCCCCGAGGCCTGGGGGCAAGTCTGGGGCAGGTGCAGGGCGATGTCCTTCAAACTGTCTCGCTCCTGTCTTATCTCCTGCAGGTCCTGTTCCAGGTGGGTCAGTTGGCTCTTCTGGTCCTGGGCAGCTGACCATAGGGTCTGGATCTTCACGTTCAGGGCAAGGCTCTCCACGCAGCCACGCAGAACACCCAACCGCACCACCGTCTCACTCAGGATACAGTCAAACTGCTCCAGCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU427337 False 1018 lncRNA 0.41 1 19621070 19622087
TU427338 True 1522 lncRNA 0.46 1 19621152 19622673

Neighbor

gene id symbol gene type direction distance location
LOC110523383 LOC106568686 coding upstream 112005 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 256981 19358271 ~ 19364089 (+)
LOC110523370 fa69b coding upstream 1042842 18558152 ~ 18578228 (+)
egfl7 LOC106568866 coding upstream 1114928 18487620 ~ 18506142 (+)
LOC110523366 nsa2 coding upstream 1198812 18415774 ~ 18422258 (+)
LOC110523391 LOC106568645 coding downstream 428720 20051393 ~ 20381619 (+)
LOC110523393 LOC106568920 coding downstream 767857 20390530 ~ 20414156 (+)
LOC110522816 LOC106568602 coding downstream 885401 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 coding downstream 1208438 20831111 ~ 20842676 (+)
pnx LOC106568480 coding downstream 1235669 20858342 ~ 20859762 (+)
G375730 NA non-coding upstream 123780 19497070 ~ 19497290 (+)
G375723 NA non-coding upstream 129582 19491282 ~ 19491488 (+)
G375708 NA non-coding upstream 137553 19483237 ~ 19483517 (+)
G375696 NA non-coding upstream 144664 19476021 ~ 19476406 (+)
G375980 NA non-coding downstream 183056 19805729 ~ 19812504 (+)
G376250 NA non-coding downstream 295178 19917851 ~ 19918156 (+)
G376267 NA non-coding downstream 303948 19926621 ~ 19926821 (+)
G376287 NA non-coding downstream 327403 19950076 ~ 19950291 (+)
G376319 NA non-coding downstream 360120 19982793 ~ 19983038 (+)
arhgef28a LOC106568988 other upstream 1537705 18067350 ~ 18177035 (+)
G373726 NA other upstream 1913313 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 2738885 16870434 ~ 16882185 (+)
G372373 NA other upstream 2882570 16735642 ~ 16738500 (+)
G372281 LOC106569177 other upstream 3400137 16218328 ~ 16220933 (+)
G376320 NA other downstream 360588 19983261 ~ 19983848 (+)
G377022 NA other downstream 968807 20591480 ~ 20596863 (+)
LOC110523400 LOC106568542 other downstream 1485496 21108129 ~ 21160149 (+)

Expression


Co-expression Network