G376321 (LOC107579696)


Basic Information

Item Value
gene id G376321
gene name LOC107579696
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19984651 ~ 19984987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU427803
cctcctctcccgccggagcggggttttttttttgttaagaagaaggacgggtccctacgcccctgcatagattatcgagggctgaatgacataacagtgaagaatcgttatccgcttcctcttatgtcttcagccttcgagatcctgcagggagccaggtttttcactaagttggaccttcgtaacgcttaccatctcgtgcgcatcagggagggggacgagtggaagacggcatttaacactccgttagggcactttgaataccgggttcttcctttcggcctcgctaacgctccagctgtctttcaggcattagtcaatgatgtcctgagagaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC109045530

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU427803 True 337 lncRNA 0.51 1 19984651 19984987

Neighbor

gene id symbol gene type direction distance location
LOC110523383 LOC106568686 coding upstream 475586 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 620562 19358271 ~ 19364089 (+)
LOC110523370 fa69b coding upstream 1406423 18558152 ~ 18578228 (+)
egfl7 LOC106568866 coding upstream 1478509 18487620 ~ 18506142 (+)
LOC110523366 nsa2 coding upstream 1562393 18415774 ~ 18422258 (+)
LOC110523391 LOC106568645 coding downstream 66406 20051393 ~ 20381619 (+)
LOC110523393 LOC106568920 coding downstream 405543 20390530 ~ 20414156 (+)
LOC110522816 LOC106568602 coding downstream 523087 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 coding downstream 846124 20831111 ~ 20842676 (+)
pnx LOC106568480 coding downstream 873355 20858342 ~ 20859762 (+)
G376319 NA non-coding upstream 1613 19982793 ~ 19983038 (+)
G376287 NA non-coding upstream 34360 19950076 ~ 19950291 (+)
G376267 NA non-coding upstream 57830 19926621 ~ 19926821 (+)
G376250 NA non-coding upstream 66495 19917851 ~ 19918156 (+)
G375980 NA non-coding upstream 172147 19805729 ~ 19812504 (+)
G376322 NA non-coding downstream 1807 19986794 ~ 19987027 (+)
G376323 NA non-coding downstream 2525 19987512 ~ 19991060 (+)
G376326 NA non-coding downstream 7690 19992677 ~ 19993109 (+)
G376330 NA non-coding downstream 13353 19998340 ~ 19998596 (+)
G376454 NA non-coding downstream 203789 20188776 ~ 20189381 (+)
G376320 NA other upstream 803 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 1901286 18067350 ~ 18177035 (+)
G373726 NA other upstream 2276894 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 3102466 16870434 ~ 16882185 (+)
G372373 NA other upstream 3246151 16735642 ~ 16738500 (+)
G377022 NA other downstream 606493 20591480 ~ 20596863 (+)
LOC110523400 LOC106568542 other downstream 1123182 21108129 ~ 21160149 (+)
G378660 NA other downstream 2187548 22172535 ~ 22231920 (+)

Expression


Co-expression Network