G376323


Basic Information

Item Value
gene id G376323
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19987512 ~ 19991060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU427806
gtgttactcatgcctgaaccagactatcgttgtgtttgctgcaaccttgtcctgtcctgtcggaatctgcctgttcatctaaccttgtcctgtcctgtcggaatctgcctgtccatctgagcctacgtgtgtttcgtcattaaagaaactctgttttgttcattcgcttttgggtcctcattcacgcacctgacacattgcctttaaatttcaatcccaCTGTAatgctggaacattgcctttataTTTCAATCTCACTGTAacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCAATCCCCCTGTAacactggaacattgcctttaaatttcaatcccactgtaacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCAATCCCCCTGTAacactggaacattgcctttataTTTCAATCCCACTGTAatgctggaacattgcctttaaatttcaatctcACTGTAatgctggaacattgcctttataTTTCAATCTCACTGTAatgctggaacattgcctttataTTTCAATCTCACTGTAacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCGATCCCCCTGTAacactggaac
>TU427807
gtgttactcatgcctgaaccagactatcgttgtgtttgctgcaaccttgtcctgtcctgtcggaatctgcctgttcatctaaccttgtcctgtcctgtcggaatctgcctgtccatctgagcctacgtgtgtttcgtcattaaagaaactctgttttgttcattcgcttttgggtcctcattcacgcacctgacacattgcctttaaatttcaatcccaCTGTAatgctggaacattgcctttataTTTCAATCTCACTGTAacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCAATCCCCCTGTAacactggaacattgcctttaaatttcaatcccactgtaacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCAATCCCCCTGTAacactggaacattgcctttataTTTCAATCCCACTGTAatgctggaacattgcctttaaatttcaatccccCTGTAACACtggagcattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCAATCCCCCTGTAatgctggaacattgcctttacatttcaatctcACTGTAatgctggaacattgcctttaaatttcaatccccctgtaacactggaacattgcctttataTTTCAATCTCACTGTAatgctggaacattgcctttataTTTCAATCTCACTGTAacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttataTTTCGATCCCCCTGTAacactggaac
>TU427810
CTGTAacactggaacattgcctttataTTTCAATCCCCCTGTAacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttaaatttcaatccccctgtaacactggaacattgcctttaaatttcaatctcactgtaacactggaacattgcctttacatttcaatccccctgtaacactggaacattgcctttaaatttcaatccccctgtaacactggaacattgccttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU427806 False 690 lncRNA 0.41 3 19987512 19989759
TU427807 False 842 lncRNA 0.41 2 19987512 19989759
TU427810 True 252 lncRNA 0.40 2 19990201 19991060

Neighbor

gene id symbol gene type direction distance location
LOC110523383 LOC106568686 coding upstream 478447 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 623423 19358271 ~ 19364089 (+)
LOC110523370 fa69b coding upstream 1409284 18558152 ~ 18578228 (+)
egfl7 LOC106568866 coding upstream 1481370 18487620 ~ 18506142 (+)
LOC110523366 nsa2 coding upstream 1565254 18415774 ~ 18422258 (+)
LOC110523391 LOC106568645 coding downstream 60333 20051393 ~ 20381619 (+)
LOC110523393 LOC106568920 coding downstream 399470 20390530 ~ 20414156 (+)
LOC110522816 LOC106568602 coding downstream 517014 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 coding downstream 840051 20831111 ~ 20842676 (+)
pnx LOC106568480 coding downstream 867282 20858342 ~ 20859762 (+)
G376322 NA non-coding upstream 485 19986794 ~ 19987027 (+)
G376321 LOC107579696 non-coding upstream 2525 19984651 ~ 19984987 (+)
G376319 NA non-coding upstream 4474 19982793 ~ 19983038 (+)
G376287 NA non-coding upstream 37221 19950076 ~ 19950291 (+)
G376267 NA non-coding upstream 60691 19926621 ~ 19926821 (+)
G376326 NA non-coding downstream 1617 19992677 ~ 19993109 (+)
G376330 NA non-coding downstream 7280 19998340 ~ 19998596 (+)
G376454 NA non-coding downstream 197716 20188776 ~ 20189381 (+)
G376471 NA non-coding downstream 230876 20221936 ~ 20226766 (+)
G376499 NA non-coding downstream 275826 20266886 ~ 20267159 (+)
G376320 NA other upstream 3664 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 1904147 18067350 ~ 18177035 (+)
G373726 NA other upstream 2279755 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 3105327 16870434 ~ 16882185 (+)
G372373 NA other upstream 3249012 16735642 ~ 16738500 (+)
G377022 NA other downstream 600420 20591480 ~ 20596863 (+)
LOC110523400 LOC106568542 other downstream 1117109 21108129 ~ 21160149 (+)
G378660 NA other downstream 2181475 22172535 ~ 22231920 (+)

Expression


Co-expression Network