G376859


Basic Information

Item Value
gene id G376859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20387280 ~ 20387705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428374
TATCAACTATAACTCAACCAGGGGAAATCGTGGAGCTGTTTATTATCCTTTTGCTTATCATCTTCTCTGCTTTGTCGGTTTTGTATCACTGTCATAACGGCTGCACAACACAATAACAATGGCATATAGGCCTAGTCATAGAATTATTGGAGTCAGTTTGTAACAACTGACTGTGCACTATCACACCACAGACAGTGTTTGATGTAAACCTTTCATCTACCAGTAGGATCTTAGTTACAACATCTGTGTTTGTGCAGTAAAAGGGCCCTGTCAAATTCCTCGACCATGCCCCAAATGACCATGCCCTAAATGACAATGCCCCAAATGACCATGCCCTAAATGACCATGCGCTAAATGACCATGCCCTAAATGACCATGCCCTAAATGACCATGCCCCAAATGACCATGCCCTAAATGACCATGCCC

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU428374 True 426 lncRNA 0.43 1 20387280 20387705

Neighbor

gene id symbol gene type direction distance location
LOC110523391 LOC106568645 coding upstream 5661 20051393 ~ 20381619 (+)
LOC110523383 LOC106568686 coding upstream 878215 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 1023191 19358271 ~ 19364089 (+)
LOC110523370 fa69b coding upstream 1809052 18558152 ~ 18578228 (+)
egfl7 LOC106568866 coding upstream 1881138 18487620 ~ 18506142 (+)
LOC110523393 LOC106568920 coding downstream 2825 20390530 ~ 20414156 (+)
LOC110522816 LOC106568602 coding downstream 120369 20508074 ~ 20759255 (+)
LOC110522817 LOC106568462 coding downstream 443406 20831111 ~ 20842676 (+)
pnx LOC106568480 coding downstream 470637 20858342 ~ 20859762 (+)
LOC110522818 LOC106568484 coding downstream 494233 20881938 ~ 20897867 (+)
G376857 NA non-coding upstream 2956 20384026 ~ 20384324 (+)
G376536 NA non-coding upstream 51700 20310816 ~ 20335580 (+)
G376503 NA non-coding upstream 89670 20272658 ~ 20297610 (+)
G376499 NA non-coding upstream 120121 20266886 ~ 20267159 (+)
G376471 NA non-coding upstream 160514 20221936 ~ 20226766 (+)
G376862 NA non-coding downstream 560 20388265 ~ 20388600 (+)
G376864 NA non-coding downstream 1800 20389505 ~ 20389755 (+)
G376867 NA non-coding downstream 33225 20420930 ~ 20421730 (+)
G376938 NA non-coding downstream 73299 20461004 ~ 20461340 (+)
G376972 NA non-coding downstream 116316 20504021 ~ 20504333 (+)
G376320 NA other upstream 403432 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2303915 18067350 ~ 18177035 (+)
G373726 NA other upstream 2679523 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 3505095 16870434 ~ 16882185 (+)
G372373 NA other upstream 3648780 16735642 ~ 16738500 (+)
G377022 NA other downstream 203775 20591480 ~ 20596863 (+)
LOC110523400 LOC106568542 other downstream 720464 21108129 ~ 21160149 (+)
G378660 NA other downstream 1784830 22172535 ~ 22231920 (+)

Expression


Co-expression Network