G377004


Basic Information

Item Value
gene id G377004
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20572407 ~ 20573061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428524
ctcttttgcacatcgttacagccctgtatatagccataatatgtcTCCCATTCCTTTAGAACTTTtgtgagagagtgacagagatagagagagtctagacagagggagaggtgacaAAAATAAAGATtaagagtgagaaagagacagagacagagacatatagagggacagagacagggagaggttgtgtgtgattgtgttgagtgagaaagagacagagacatatagagggacagagacagagagaggttgtgtgtgattgtgttgagtgagaaagagacagagacatatagagggacagagacagagagaggttgtgtgtgattgtgttgagtgagaaagagacagagagaggttgtgtgtgattgtgttgagtgagaaagagacagagagaggttgtgtgtgattgtgttgagtgagaaagagacagagacatatagagggacagagacagagagaggttgtgtgtgattgtgttgagtgagaaagagacagagacatatagagggacagagacagagagaggttgtgtgtgattgtgttgagtgagaaagagacagagacatatagagggaaagagacagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU428524 True 590 lncRNA 0.44 2 20572407 20573061

Neighbor

gene id symbol gene type direction distance location
LOC110523393 LOC106568920 coding upstream 158251 20390530 ~ 20414156 (+)
LOC110523391 LOC106568645 coding upstream 190788 20051393 ~ 20381619 (+)
LOC110523383 LOC106568686 coding upstream 1063342 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 1208318 19358271 ~ 19364089 (+)
LOC110523370 fa69b coding upstream 1994179 18558152 ~ 18578228 (+)
LOC110522817 LOC106568462 coding downstream 258050 20831111 ~ 20842676 (+)
pnx LOC106568480 coding downstream 285281 20858342 ~ 20859762 (+)
LOC110522818 LOC106568484 coding downstream 308877 20881938 ~ 20897867 (+)
LOC110523395 LOC106568500 coding downstream 325060 20898121 ~ 20910637 (+)
ccar2 LOC106568504 coding downstream 349953 20923014 ~ 20944043 (+)
G376999 NA non-coding upstream 4864 20567292 ~ 20567543 (+)
G376983 NA non-coding upstream 50942 20521212 ~ 20521465 (+)
G376978 NA non-coding upstream 57465 20514741 ~ 20514942 (+)
G376976 NA non-coding upstream 59278 20512803 ~ 20513129 (+)
G376972 NA non-coding upstream 68074 20504021 ~ 20504333 (+)
G377057 NA non-coding downstream 66137 20639198 ~ 20639463 (+)
G377062 NA non-coding downstream 74847 20647908 ~ 20648189 (+)
G377063 NA non-coding downstream 75976 20649037 ~ 20649329 (+)
G377065 NA non-coding downstream 78771 20651832 ~ 20652071 (+)
G377071 NA non-coding downstream 88291 20661352 ~ 20661558 (+)
G376320 NA other upstream 588559 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2489042 18067350 ~ 18177035 (+)
G373726 NA other upstream 2864650 17704113 ~ 17707757 (+)
G372618 LOC105030512 other upstream 3690222 16870434 ~ 16882185 (+)
G372373 NA other upstream 3833907 16735642 ~ 16738500 (+)
G377022 NA other downstream 18419 20591480 ~ 20596863 (+)
LOC110522816 LOC106568602 other downstream 170523 20508074 ~ 20759255 (+)
LOC110523400 LOC106568542 other downstream 535108 21108129 ~ 21160149 (+)
G378660 NA other downstream 1599474 22172535 ~ 22231920 (+)

Expression


Co-expression Network