XLOC_023203


Basic Information

Item Value
gene id XLOC_023203
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 42091207 ~ 42093362 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047119
ctcgCTGGACAAAGCGTCATTTTATTTCCATGAGTGTGAAACACAAGATAAACAATGTTAACAGAGACGGTGACAAGAGAGTAAAGAGAGCAGAAACGACAGATCCTGCTGAATAatccagctcaaaccagtctaggATGGTTGagtggttttagaggggttttggccattacCAGGCTGGTTTCtggccattttcagcctggttaGTGCTGGATAgtgaccatctaaaaccagcttgaccattctggtttaggctggacatagctggttttggctccCAGCCTGtctagctaaaaccaggctggaaatagctggaaatggccaaaacccctctaaaaccagccaacaatcctaggctggtttaagctggatttttcagcagggttatattaaagtaaaacactttcagtcacacacacacacatgctgtctGGCTGGTTTATACTGCAATATCTGAAAACTCTTAAATCCAGAAGCATTTctagacaaacacaaacacagtgtcatattttcagaaataaaaaaatgaagagttttcattaaaacaagcagaataatcccGTTTCTCCTTCCGacatcagattattctgcttgttttagtgaaaaactcttcattttgactcattgttCTTGAAAACACCACTATATCTtattcttgtctagaaaatgctgacTGATTAAAGAGTTTACAGATATATGGACCAGAGACCAGACACAAACTCAGATTAGAGCAGCATATCTGCAGTGTGTCCTGCTTTATTCCTCATACACATACTGAAACCTGCCCAAACCCAGCACACCGTTCCATCCTGACATCTGTCAAACACAGGCAGAAACACTGATCTGGAATCAGATGAATAACCGTGCAGTCCTGAATCATGCAGATGAAGCAGAATAAGAGATCAAGCAGCTTCCAGAACAAACATCTCCACATTCATCATCAGTCACAACCAAAACCACTGGAGATCCCGCGGCTAATAATCTGGAAATTCAGCTTATTTTCTGAACTGTGCTTCACTCAAACTGGTTTCATCATGAATGTGAACAGGTTGAGAGAGGTTTGCTCTCTATCCTGACGACGTCAGTCTCTGTTTGCTGAATAAACATCAGTCAATAAACCAAACTACTGTGACTAGCTCAAGATAACCGTGAAGAGCTTTCCTGAACACTCAGTATTGAAGATCAACACAACACATGCTGCTCGAGTCTCAGTCTCAGTCCACAAATCTGAAAACTCTTAAACCAAAAGCATTTTCTGGAGAATAAGAATAAGCTATTGTGTGGTTTTCAGCAGTAATGAGTCAGAATGAAGAGTTTTTCACTACTATAAGAAGAATCATCCTGTTCCCAGTGAAATGACCTGACTCTGCTTCCCCACAGGCAGATTATTCAGCTTCATGCAGTGACACTCTCTTCATTCTGGCTCATTACGAGAATATATTCAGTTTCCAGATATGTGGACtagaaataaataagtaataaagcATTGCAGTGCACACAAACACCAGAGAAGGGACTGTTTTCCAGGTGAACGGCTTCAGTGCAGTTGGTGTTGTGTTTGTCCTGCAGATGGCGCTGCTTAGTTTACACGCCTGCTGCTTGATTTCAGAGCTAAGAGGCAGCACAGGGAGACTGAAGCTTATTTCTGCCATGGGAATAAACATATCACACAATTCTGCCTTCTTAGAAAACCAAAACACTAACAAATAAAAGCTCTGCATGGTGagaaaatcagtttttattcCATGGCAGAAACAAATCTTCATATACTGAAGACACCTAGAGACGAGTGACGtcattaaaggggcagttcacgcAAAAATCAACATGTCCTCAGCGTTAAATCACACtcacaacacaaaacaagatattctgaagaatgctggaacgAGAACAAGCAACGGAATCACCAAACATCATATCTCTtactttacaaaacaaaacactaagaGACGAATAATAAGAGAtgaaacacatttgctgaagTGCATTTTACACCGACATGACTCCATAATGCTCGTCTTGTTTACTGtcggttgctaggttaccaataccacAGTCAGCCACTCTAGGGATGCTCGCCTTGTGTActaatggttgctag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047119 True 2104 lncRNA 0.41 2 42091207 42093362

Neighbor

gene id symbol gene type direction distance location
XLOC_023202 NA coding upstream 14241 42075975 ~ 42076966 (+)
XLOC_023201 top1mt coding upstream 15720 42074143 ~ 42075487 (+)
XLOC_023200 top1mt coding upstream 72964 42004640 ~ 42018243 (+)
XLOC_023199 zbtb14 coding upstream 96531 41989108 ~ 41994676 (+)
XLOC_023198 epb41l3a coding upstream 103875 41931585 ~ 41987332 (+)
XLOC_023204 ahrra coding downstream 1471 42094833 ~ 42101600 (+)
XLOC_023205 snx16 coding downstream 23869 42117231 ~ 42121054 (+)
XLOC_023206 NA coding downstream 29174 42122536 ~ 42123841 (+)
XLOC_023207 NA coding downstream 30759 42124121 ~ 42125758 (+)
XLOC_023208 wwp1 coding downstream 34621 42127983 ~ 42141008 (+)
XLOC_023196 NA non-coding upstream 300668 41786545 ~ 41790539 (+)
XLOC_023195 FP101885.1 non-coding upstream 380403 41710688 ~ 41710804 (+)
XLOC_023192 CABZ01080380.1 non-coding upstream 554016 41537062 ~ 41537191 (+)
XLOC_023190 NA non-coding upstream 646488 41402545 ~ 41444719 (+)

Expression


Co-expression Network