G377125


Basic Information

Item Value
gene id G377125
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20759746 ~ 20760485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428651
tcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgactgtgtggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaa
>TU428652
tcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgactgtgtggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtattctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatagtatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcatgtgcatttatacggagacttgattac

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU428651 False 271 lncRNA 0.46 1 20759746 20760016
TU428652 True 740 lncRNA 0.44 1 20759746 20760485

Neighbor

gene id symbol gene type direction distance location
LOC110522816 LOC106568602 coding upstream 491 20508074 ~ 20759255 (+)
LOC110523393 LOC106568920 coding upstream 345590 20390530 ~ 20414156 (+)
LOC110523391 LOC106568645 coding upstream 378127 20051393 ~ 20381619 (+)
LOC110523383 LOC106568686 coding upstream 1250681 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 1395657 19358271 ~ 19364089 (+)
LOC110522817 LOC106568462 coding downstream 70626 20831111 ~ 20842676 (+)
pnx LOC106568480 coding downstream 97857 20858342 ~ 20859762 (+)
LOC110522818 LOC106568484 coding downstream 121453 20881938 ~ 20897867 (+)
LOC110523395 LOC106568500 coding downstream 137636 20898121 ~ 20910637 (+)
ccar2 LOC106568504 coding downstream 162529 20923014 ~ 20944043 (+)
G377107 NA non-coding upstream 17103 20709523 ~ 20742643 (+)
G377106 NA non-coding upstream 50601 20708923 ~ 20709145 (+)
G377105 NA non-coding upstream 53849 20705691 ~ 20705897 (+)
G377099 NA non-coding upstream 57532 20697194 ~ 20702214 (+)
G377091 NA non-coding upstream 75431 20684113 ~ 20684315 (+)
G377143 LOC100194676 non-coding downstream 39576 20800061 ~ 20846940 (+)
G377144 LOC100194676 non-coding downstream 89169 20849654 ~ 20851140 (+)
G377186 NA non-coding downstream 153667 20914152 ~ 20914533 (+)
G377195 NA non-coding downstream 156702 20917187 ~ 20917779 (+)
G377197 NA non-coding downstream 160650 20921135 ~ 20921358 (+)
G377022 NA other upstream 162883 20591480 ~ 20596863 (+)
G376320 NA other upstream 775898 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2676381 18067350 ~ 18177035 (+)
G373726 NA other upstream 3051989 17704113 ~ 17707757 (+)
LOC110523400 LOC106568542 other downstream 347684 21108129 ~ 21160149 (+)
G378660 NA other downstream 1412050 22172535 ~ 22231920 (+)
G378832 NA other downstream 1743267 22503752 ~ 22506270 (+)
G378868 NA other downstream 1841625 22602110 ~ 22629669 (+)

Expression


Co-expression Network