XLOC_023206


Basic Information

Item Value
gene id XLOC_023206
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 42122536 ~ 42123841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047120
TGAGCGTGTCAGCAATTTGGGACACGCCCCTCCTCCTCTGCCGGTGGGCGGAGTCTGAGTCTCAGTTGACTTCAGTAAGTTTGAGCCGCAGACCCGCAGCTGCCGCGTCTGtgaATCATGGCTCGCAGTGACGGCTGAGGATCAGTGGCGTCTCTCACACACTTCTGACGTAAGTCCAGcagctcctgtgtgtgtgtgtgtgtgtgtgtgtcctgaagCGGGTGAGTTTAGCCAGATCAGGTCAGTGTGTTCGAGGAGTGTTGAAGGTGCTCCTGTTACCGTGGCAACAGAGTGAGCAATCTCCCGAACCGGCTTAACTGATCCAGCTCTGAGGAACCGACTGCTCTCACTGCGCCCCCTACAGGagaggagcacacacacacac
>TCONS_00047121
GTGAGTTTACCGTTTCTTTACTCAGTTCGGCTCATTCTACCGGTGTACCGGCGTTTACCGTCACCGCAGAACTACAGCGGCGCAGGGTAACGGCTGAAGATGGCGGAGCGGTAACAGGCCTGATCCAGATTAAACCCGTTTAACGCTGCTgacagacataaacacacacacgcctgAACGAGTtgaATCATGGCTCGCAGTGACGGCTGAGGATCAGTGGCGTCTCTCACACACTTCTGACGTAAGTCCAGcagctcctgtgtgtgtgtgtgtgtgtgtgtgtcctgaagCGGGTGAGTTTAGCCAGATCAGGTCAGTGTGTTCGAGGAGTGTTGAAGGTGCTCCTGTTACCGTGGCAACAGAGTGAGCAATCTCCCGAACCGGCTTAACTGATCCAGCTCTGAGGAACCGACTGCTCTCACTGCGCCCCCTACAGGagaggagcacacacacacac
>TCONS_00046836
GTTCGGCTCATTCTACCGGTGTACCGGCGTTTACCGTCACCGCAGAACTACAGCGGCGCAGGGTAACGGCTGAAGATGGCGGAGCGGTAACAGGCCTGATCCAGATTAAACCCGTTTAACGCTGCTgacagacataaacacacacacgcctgAACGAGTGTAAGAAACACACGGGTGTGTGAGACCGGacagctgtgtgtttgtgtgtatgtgtaatccGTGTGACAGttgcgtgcgtgtttgtgtgtgtgtgtgtgtgtgtcagctctgACAGTTTATCTGTCGTTTGGTTGCGCTGTGCTAATGTGTTAGCCTGTTAGCATGAGTTAGCGTATAAACGGCGGAATAAAGCGGTTTTCGGGCTGATTTAAGCACAGAGTGGACTCAGATGAACACCGAACcgaacacacacactcctctacACTCATTAGTGTGTGTTTGAAGAGTCATTAATGAGCTGCGCAGGCCGCAGACAAACACCGATACACACAGATCAGCAGGAGctcagctgaacacacacacacacacacacacctcagctGAACTATTACTGTTCACACACACTCTGCTCAATCAGTGTGTGTGACAACAGATCGCTCCTGCAGACCCAAACTGAACAACAACACAcaaactgagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgttagcagtGTTTCTTCCATGAGCCCTCGGGTCAGAGGTCACCCAGCCGGCCATTGCTGATGGTCAACGCGGAAACTACACAAACTTCAGCCTGTGCTCGTCTGCAtgaATCATGGCTCGCAGTGACGGCTGAGGATCAGTGGCGTCTCTCACACACTTCTGACGTAAGTCCAGcagctcctgtgtgtgtgtgtgtgtgtgtgtgtcctgaagCGGGTGAGTTTAGCCAGATCAGGTCAGTGTGTTCGAGGAGTGTTGAAGGTGCTCCTGTTACCGTGGCAACAGAGTGAGCAATCTCCCGAACCGGCTTAACTGATCCAGCTCTGAGGAACCGACTGCTCTCACTGCGCCCCCTACAGGagaggagcacacacacacac

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047120 False 385 lncRNA 0.57 2 42122536 42123841
TCONS_00047121 False 457 lncRNA 0.54 2 42122647 42123841
TCONS_00046836 True 1051 lncRNA 0.52 2 42122671 42123841

Neighbor

gene id symbol gene type direction distance location
XLOC_023205 snx16 coding upstream 1482 42117231 ~ 42121054 (+)
XLOC_023204 ahrra coding upstream 20936 42094833 ~ 42101600 (+)
XLOC_023203 NA coding upstream 29174 42091207 ~ 42093362 (+)
XLOC_023202 NA coding upstream 45570 42075975 ~ 42076966 (+)
XLOC_023201 top1mt coding upstream 47049 42074143 ~ 42075487 (+)
XLOC_023207 NA coding downstream 280 42124121 ~ 42125758 (+)
XLOC_023208 wwp1 coding downstream 4142 42127983 ~ 42141008 (+)
XLOC_023209 serpinb1l3 coding downstream 24299 42148140 ~ 42157913 (+)
XLOC_023196 NA non-coding upstream 331997 41786545 ~ 41790539 (+)
XLOC_023195 FP101885.1 non-coding upstream 411732 41710688 ~ 41710804 (+)
XLOC_023192 CABZ01080380.1 non-coding upstream 585345 41537062 ~ 41537191 (+)

Expression


Co-expression Network