G377143 (LOC100194676)


Basic Information

Item Value
gene id G377143
gene name LOC100194676
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20800061 ~ 20846940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428675
ctcatggccttactctggcctcctgtACTATACAATAGAACATGCATTTTACCAGAATTGCAAATGCACTCTAAGTGTATCTTTCTCTTGTGTTACAGTATTATGTTCCTCCCTATATGTACATCTTTCTCCcacagtagtagtaatgatgatggtagtgatagcagtttagtgaaggtggtggtggtagtagtagtaatgatgatggtagtgatagcagtttagtgatggtggaggtggtagtagtaatgatgatggtagtgatagcagtttagtgaaggtgggggtggttgtagtagtaatgatgatggtagtgataggaGTTTAGTGaaggttgtggtggtagtagtaataatgatgatggtagtaatagcagtttagtgatggggtggtagtagtaataatgatgatgatagtgatagcagtttagtgatggtggtggtggtagtagtagtaatgatgatggtagtgatagcagtttagtgatggtggtggtagtagtagtaatgatgatggtagtgatagcagtttagtgatggtggtggtagaagTAATGATGATGggagtgatagcagtttagtgatggtggtggtagtagtagtagtaatcaaatcaaatcaaatcaaatgtatttgtacatcagctgatatctcaaagtgctgtacagaaacacagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacataggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaacagttgaaactggagcagcagcacggtcaggtggactggggacagcaaggagtcatcatgtcaggtattcctggggcatggtcctagggctcaggtcagttgaaactggagcagcagcacggccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccttagccccccgacacataaactactgcagcataaatactggaggctgagacaggaggggtctggagacactgtggccccatctgaggacacccccggacagggccaaacaggaaggataaaaccccacccactttgccaaagcacagcccccacaccactagtaatgatgatggtagtgatagcagtttagtgatggtggtggtggtagtagtagtaatgatgatggtagtgaaagcagtttagtgatggtggtggtagtagtaatgatgatgatggtagtgatagcagtttagtgatggtggaggtggtagtagtaatgatgatggtagtgaaaGCAGTTTAGTGAAGGTgggggtggtagtagtagtaatgatgatgttACTGATAGCAGttttgtgatggtggtggtagtagttataatgatgatggtagtgatagcagtttagtgatggtggtggtagtaataataatgatgatggtcgTGATAGCAgtttggtgatggtggtggtggtgatagtagtagtaatgatgatggtagtgatagcagtttagtgatggtggtggtagaagtaatgatgacggaagtgatagcagtttagtgatggtggtggtagtagtagtagtaatgatgatggtagtgaaagcagtttagtgatggtggtggtagtagtaatgatgatgatggtagtgatagcagtttagtgatggtggaggtggtagtagtaatgatgatggtagtgaaaGCAGTTTAGTGAAGGTgggggtggtagtagtagtaatgatgatgttACTGATAGCAGttttgtgatggtggtggtagtagttataatgatgatggtagtgatagcagtttagtgatggtggtggtagtaataataatgatgatggtcgTGATAGCAgtttggtgatggtggtggtggtgatagtagtagtaatgatgatggtagtgatagcagtttagtgatggtggtggtagaagtaatgatgacggaagtgatagcagtttagtgatggtggtggtagtagtagtagtaatgatgatggtagtgatagcagtttagtgatggtggtggtggtagtagtagtaatgatgatggtagtgatagcagtttagtgatggtggtggtagtagtaatgatgatgatggtagtgatagcagtttagtgatggtggtggtggtagtagtagtaatgatgatggtagtgatagcagtttagtgaaggtggtggtggtagtaggaaTGAtcatggtagtgatagcagtttagtgaaggtggaggtggtagtagtaatgatgatggtagtgagaGCAGTTTAGTGAAGGTgggggtggtagtagtagtaatgatgatggtagtgatagcagttttgtgatggtggtggtggtagtagtagtaatgatgatggtagttttAGCAGTTTAgtgaaggtggtggtggtagtagcaaaataatgatgatggtagtaataacagtttagtgatggtggtggtagtagtaatgatgatggtagtgatagcagtttagtgatggtggtggtggtagtagtagtaatgatgatggtagtgatagcagtttagtgatggtggtggtagaagtaatgatgatggaagtgatagcagtttagtgattgtggtggtagtagtaTTAATGATGaataaaaatagaaaatgtaCCTTGTCCTTGTAAGTGTCCGGCAGTGCCTTGGCTGTCTCAGTGCCATCTGGTAGTTCTATGAAGAAGCCCAGCGTGTCTCCCTGTCCGTAGCCTGAGGAGTAGTGTTTCCCTACAGACTGGTGGAACCGTGTCCCCTTCTTACTACGCCATGAGTAGCTGAACTTATCATAGCCCAGGGGGGCTTGCAGGTTACCCAGAGGCTGAGACCAGCCCAGTCTGGCTGCGGTGTCCGGGGGCATCTCATCGATGGAGACCTCAAAGTACCAGGATCCTTTCCTGACACCGTGGGAGGCTCTGACCATGGAGTAACCCTTCTCCCCTGTCACTGTCAGACGATCATCTGAGATCTTCAGCTGTGGGGCTCTGTCGTGCAGGGCTAGCAGTACTCTCTCGTAGAGACAGGCTCTGTAGAGGTCTCCGGGGATGGGTTTCCCAGCCCAGCAGTCcagctctagtttctctgggtcGGGGGCGTGGGGGTCTGGCTCTGCTAGGATGTAGCGGTAGCCATCTTTGTTGAAGGGGTGCTCCAGAGGGTAGCCATGGGGAGGAAGACGCTGGGCCGAGAACAGAGGGTcactacagagggagagaaaggaaaaaTGGAGTGAGTTAGTGCGCATTATGGACAGAAAGGG
>TU428677
CTTTaacactatggggtattgtgtgtaggcaagtgacaaaaatgtggaaaaagtcaaggactTCTGAATgcattgtgtatgtgtttgtgcacTCACTGGCTGGTACTTGATGTCTTTTGGAGGGTGTTTGAAAAGTGGTCCAAAGTTAACTGAAACCGTACAGCCCcggtagagagagatggcaggGAAGTAGAGACCCTCAAACAGGTTTTCATAGGCCAGACCCAGGTTAACCCCATTCTTATAGAACAGCAtCCTGCTGGGGGTAACAGTCTTCAGGCTCTTCTCTGCCTTGTCCACATAGTCCTTCTCCTCAAAGTACAGGTAGCTCTTAAACTTAATCAGCGCCTTGTCCTTGTAAGTGTCCGGCAGTGCCTTGGCTGTCTCAGTGCCATCTGGTAGTTCTATGAAGAAGCCCAGCGTGTCTCCCTGTCCGTAGCCTGAGGAGTAGTGTTTCCCTACAGACTGGTGGAACCGTGTCCCCTTCTTACTACGCCATGAGTAGCTGAACTTATCATAGCCCAGGGGGGCTTGCAGGTTACCCAGAGGCTGAGACCAGCCCAGTCTGGCTGCGGTGTCCGGGGGCATCTCATCGATGGAGACCTCAAAGTACCAGGATCCTTTCCTGACACCGTGGGAGGCTCTGACCATGGAGTAACCCTTCTCCCCTGTCACTGTCAGACGATCATCTGAGATCTTCAGCTGTGGGGCTCTGTCGTGCAGGGCTAGCAGTACTCTCTCGTAGAGACAGGCTCTGTAGAGGTCTCCGGGGATGGGTTTCCCAGCCCAGCAGTCcagctctagtttctctgggtcGGGGGCGTGGGGGTCTGGCTCTGCTAGGATGTAGCGGTAGCCATCTTTGTTGAAGGGGTGCTCCAGAGGGTAGCCATGGGGAGGAAGACGCTGGGCCGAGAACAGAGGGTcactacagagggagagaaaggaaaaaTGGAGTGAGTTAGTGCGCATTATGGACAGAAAGGG

Function

NR:

description
set1/Ash2 histone methyltransferase complex subunit ASH2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU428675 False 3514 lncRNA 0.45 6 20800061 20846940
TU428677 True 987 lncRNA 0.53 6 20845302 20846940

Neighbor

gene id symbol gene type direction distance location
LOC110522816 LOC106568602 coding upstream 40806 20508074 ~ 20759255 (+)
LOC110523393 LOC106568920 coding upstream 385905 20390530 ~ 20414156 (+)
LOC110523391 LOC106568645 coding upstream 418442 20051393 ~ 20381619 (+)
LOC110523383 LOC106568686 coding upstream 1290996 19499604 ~ 19512291 (+)
LOC110523377 LOC106568724 coding upstream 1435972 19358271 ~ 19364089 (+)
pnx LOC106568480 coding downstream 11402 20858342 ~ 20859762 (+)
LOC110522818 LOC106568484 coding downstream 34998 20881938 ~ 20897867 (+)
LOC110523395 LOC106568500 coding downstream 51181 20898121 ~ 20910637 (+)
ccar2 LOC106568504 coding downstream 76074 20923014 ~ 20944043 (+)
LOC110523398 LOC100534606 coding downstream 105209 20952149 ~ 20991376 (+)
G377125 NA non-coding upstream 39576 20759746 ~ 20760485 (+)
G377107 NA non-coding upstream 57418 20709523 ~ 20742643 (+)
G377106 NA non-coding upstream 90916 20708923 ~ 20709145 (+)
G377105 NA non-coding upstream 94164 20705691 ~ 20705897 (+)
G377099 NA non-coding upstream 97847 20697194 ~ 20702214 (+)
G377144 LOC100194676 non-coding downstream 2714 20849654 ~ 20851140 (+)
G377186 NA non-coding downstream 67212 20914152 ~ 20914533 (+)
G377195 NA non-coding downstream 70247 20917187 ~ 20917779 (+)
G377197 NA non-coding downstream 74195 20921135 ~ 20921358 (+)
G377198 NA non-coding downstream 74937 20921877 ~ 20922095 (+)
G377022 NA other upstream 203198 20591480 ~ 20596863 (+)
G376320 NA other upstream 816213 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2716696 18067350 ~ 18177035 (+)
G373726 NA other upstream 3092304 17704113 ~ 17707757 (+)
LOC110523400 LOC106568542 other downstream 261229 21108129 ~ 21160149 (+)
G378660 NA other downstream 1325595 22172535 ~ 22231920 (+)
G378832 NA other downstream 1656812 22503752 ~ 22506270 (+)
G378868 NA other downstream 1755170 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 2095352 22942205 ~ 23007315 (+)

Expression


Co-expression Network