G377144 (LOC100194676)


Basic Information

Item Value
gene id G377144
gene name LOC100194676
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20849654 ~ 20851140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428678
GCTTGGTCTTAGAATCAATTAGCCAAAGGCCTCTATAGTTTGAGTTACAAAGTGAGCTAGACATACGCGGTGTCAATGCTGAAGGTGTCGGCGGTGAACCACTTCATACAGAGAGCACACTGCAGCTCCACCTCTCCCTGGTGCCTGCCGCTCTCCTCGTCCCCAGAACCTGTCTGGGTGTCAGCTGCCTCCAAACCCTCACTACCCGGATCCATGGCCTCTTTGCCATTCGATGACTCAGTCTCCAGGTTGCCTGTCAAGTCCCCAAATCCAGCATCACCGTCCCCGGTCTCTGGTTCAACAACAGAAGCATTGGCCGCTTCTCCTTCCGAC

Function

NR:

description
set1/Ash2 histone methyltransferase complex subunit ASH2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU428678 True 333 lncRNA 0.55 3 20849654 20851140

Neighbor

gene id symbol gene type direction distance location
LOC110522817 LOC106568462 coding upstream 6978 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 coding upstream 90399 20508074 ~ 20759255 (+)
LOC110523393 LOC106568920 coding upstream 435498 20390530 ~ 20414156 (+)
LOC110523391 LOC106568645 coding upstream 468035 20051393 ~ 20381619 (+)
LOC110523383 LOC106568686 coding upstream 1340589 19499604 ~ 19512291 (+)
pnx LOC106568480 coding downstream 7202 20858342 ~ 20859762 (+)
LOC110522818 LOC106568484 coding downstream 30798 20881938 ~ 20897867 (+)
LOC110523395 LOC106568500 coding downstream 46981 20898121 ~ 20910637 (+)
ccar2 LOC106568504 coding downstream 71874 20923014 ~ 20944043 (+)
LOC110523398 LOC100534606 coding downstream 101009 20952149 ~ 20991376 (+)
G377143 LOC100194676 non-coding upstream 2714 20800061 ~ 20846940 (+)
G377125 NA non-coding upstream 89169 20759746 ~ 20760485 (+)
G377107 NA non-coding upstream 107011 20709523 ~ 20742643 (+)
G377106 NA non-coding upstream 140509 20708923 ~ 20709145 (+)
G377105 NA non-coding upstream 143757 20705691 ~ 20705897 (+)
G377186 NA non-coding downstream 63012 20914152 ~ 20914533 (+)
G377195 NA non-coding downstream 66047 20917187 ~ 20917779 (+)
G377197 NA non-coding downstream 69995 20921135 ~ 20921358 (+)
G377198 NA non-coding downstream 70737 20921877 ~ 20922095 (+)
G377022 NA other upstream 252791 20591480 ~ 20596863 (+)
G376320 NA other upstream 865806 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2766289 18067350 ~ 18177035 (+)
LOC110523400 LOC106568542 other downstream 257029 21108129 ~ 21160149 (+)
G378660 NA other downstream 1321395 22172535 ~ 22231920 (+)
G378832 NA other downstream 1652612 22503752 ~ 22506270 (+)
G378868 NA other downstream 1750970 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 2091152 22942205 ~ 23007315 (+)

Expression


Co-expression Network