G377184


Basic Information

Item Value
gene id G377184
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20993705 ~ 20996708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428726
gtatttctgatcaatttgatattttaatagacaaatttgtttttctttctaaagaaacaaggacatttctaagtgaccccaacctTTTGAACAGGTGCGTGTGGGTGAGCCATGAACTCCCTCAGGCCTGGGCTGGTGTCTGCCTGCCTACACCTCAATTGGTCCGGGTTCTCACCTGGTACGATTCTCAGCAGGTCCTGCGTCTGCTCCTGTAGAGGCTCTGGACTTAGGTTCTGTTTACGACTTACGAGTCGAAAGGGAAAGGCAGGACCACTCCGGTGTCCCACCCAACCCTCCAATGAGGATCGTCATGGGACATCACTGCAtccagtttttgttttgttgtgaaTCGCTCGTCTCTCTTATCCTTGCATTTCCTCGCAGGATCATGTGTCCTGAAATGCTGTAGGAAtccactgagcaaaaatataaatgcaacaatttcaaagaatttcatgagttacagttcatataagaaataCATTAATTAGGCCCATATCTATTAATTTCATATGATGGGAGTACAGACagacatctgttggtcacaaatacccccaacatttttttattttaaagtagGAGCGTGGGTCAGAAAACCACTcattatctggtgtgaccaccatttgcctcgtgAAGCATGACATCATCTTCACATATAGTTGATCAGGCTTTtgcttgtggaatgttgtctcactcaTGAATGGCTGTGTgacgttgctggatattggcggggtatggaacacgctgtcgatccagagcatcccaaacatgctcagtgggtgacatgtctgagtatgcagacATTGGAAGAACCGGGACTTTTTCAGCTTCCTGgagttgtgtacagatccttgcgacatggtgcTGTGCATTatgctaaaacatgaggtgatggcggcagatgaatgacacaacaatgggcctcaggatctcatcactgtATCTCTTCAAATTGTAtctattcaaattgccatcaataaaatacaattgtgttcgttgtctgtagcttctGCCTGCCTATACCATAGCCCCACCGCCACCttggagcactctgttcacaacgttgacgtcaGCAACGCACTCGCCAACACGAAGCTGAACACGCTTTCTGCCTTCTTCCTGGTACAGTCAACTGGGATTCAtatgtgaagagcacacttctctagtggccattgaaggtgaacTTTTTCCTACTGAAGTCTGTTatgatgccaaactgcagtcagatcaagaccctggtAAGGATGACgaacatgcagatgagcttccctgagacaatttctgacagtttgtgcagaaatttttcagttgtgcaaaccAATGAAGgctcataatgtctggaacggagctaatggaatggcatcaaatacatggAAACCGATGATCCCCAGGTGAAGAAGGCGGGTgcggaggtcctggactggcatggttacatgtggtctgcggttgtaaggccgattggacgtactgccaaattctctaaaataatGATCGAgtcagcttatggtagagaaattaagatTCAATTATCTgtcaatagctctggtggacatacctaatgtcagcatgtcaattgcatgcTCCTTCAACCTgggacatctgtggcgttgtgtgacaaaactgcacatttcggtggccttttattgtccccagcacaaggtgcacctgttttaatgatcatgctgtttaatcagccttttgatatgccacacctgtcagatggatggatgatcttgacaaaggataaatgctcactaacagggatgtaaattaatttgtgcacaaaattagagaaatacatttttttgtgtgtatggaacatttctgggatctattatttcagctcatgaaacatgggatcaacattttacatgttgtgttttatatttttgataaGTGTAGATATGTATTCTTCTGCTTTCCTCTCTTACTTTACTCCTGGTAGCAGTTGCCTACATGCACAGATCTAAGATCGGCAAACCTTAGCCATTATGGggagaaatgcaaaactgaccctaAATCAGCATCTAGAGGCAACTTCATTCTACAATAGCTCACCAGACAAAATAACCAAAGTCTACTGTTATTTGAGAACTGAGATGCAATTATATTTTTTGCCAGAGTTGTGGTCAATTGTATTTtaatttcagtcaattcaggaagtacactgaaattcccatgcttttcaatgaggaaaatGTGGAAATGGAATTTGgtgtactttctgaattgacctaACCCTGTTTTTTTGCTTGTGGTGAATAACACCTCATTCAGATCAAATTAGGTATGTCTTAGGCACCAATAATGACTATTGAGGTTACAATTACAATTGAGCCATTTAAATAAggaactctcgctctctctaatgAAGATGACTCATGAAAAAAATTGTCAAGGTTCTTTTCTGTGTAAGTGGGTGTTCCCTCTTTCGCATGGGCATGCTTTCCAACTTGAGCACGTGCAAAAATGGTCTTGCGAGAGGGTACGCCCACTCACACAGAAACTGCCCCATAACGGCCATCTCTGGCCTACCTATCCCCGGAAATTACTCTGTCTGGGGTTTTACTACACCTTACCTCTGCCTTTTTAATTGTAGATGTTTCCTTGGCCCAATCCGAAATTGACCTCTAACCCCTTGGCACTCCGTGCAGATGTAGATTTGAGAGGATTGGATAGCTGTGATAGCTCCATATTGTTCTCTGGATTTTTACCATACAGAAAATGCTCCAGGTTAGGGGCTAGCCAGCCTCTGTCACAGGCTTTCACTTCTTAATGTGAGTGATGCCGGGGCATCCAATGCTAGGTGCCAGGGGTCCATTTGGAATTGGGCTGTTTCTGTCCTCTGCATTTCACTGTGTGCTTTCTCAGCACACAGGACCTTTGAATGCGATTGATAATGTGAAATGTGGATTTGCCGCCTCATACTCCTTGTAGACTCCTTTAGTGGTGAAGATGATGAATAACTCTttcttaaataataaataaatgtgcCTGGAATAGG

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU428726 True 3004 lncRNA 0.43 1 20993705 20996708

Neighbor

gene id symbol gene type direction distance location
LOC110523398 LOC100534606 coding upstream 2329 20952149 ~ 20991376 (+)
ccar2 LOC106568504 coding upstream 49662 20923014 ~ 20944043 (+)
LOC110523395 LOC106568500 coding upstream 83068 20898121 ~ 20910637 (+)
LOC110522818 LOC106568484 coding upstream 95838 20881938 ~ 20897867 (+)
pnx LOC106568480 coding upstream 133943 20858342 ~ 20859762 (+)
LOC110522819 LOC106568526 coding downstream 54228 21050936 ~ 21099289 (+)
LOC110523400 LOC106568542 coding downstream 111421 21108129 ~ 21160149 (+)
npm2b LOC106592477 coding downstream 280860 21277568 ~ 21288531 (+)
LOC110523406 crybb1 coding downstream 477145 21473853 ~ 21477171 (+)
LOC110523407 LOC106568363 coding downstream 481977 21478685 ~ 21493435 (+)
G377188 LOC106581475 non-coding upstream 729 20946529 ~ 20992976 (+)
G377198 NA non-coding upstream 71610 20921877 ~ 20922095 (+)
G377197 NA non-coding upstream 72347 20921135 ~ 20921358 (+)
G377195 NA non-coding upstream 75926 20917187 ~ 20917779 (+)
G377240 NA non-coding downstream 22954 21019662 ~ 21019907 (+)
G377241 NA non-coding downstream 25997 21022705 ~ 21023369 (+)
G377243 NA non-coding downstream 28256 21024964 ~ 21025268 (+)
G377251 NA non-coding downstream 37234 21033942 ~ 21034516 (+)
G377261 NA non-coding downstream 46981 21043689 ~ 21043996 (+)
LOC110522817 LOC106568462 other upstream 157146 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 235204 20508074 ~ 20759255 (+)
G377022 NA other upstream 396842 20591480 ~ 20596863 (+)
G376320 NA other upstream 1009857 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2910340 18067350 ~ 18177035 (+)
G378660 NA other downstream 1175827 22172535 ~ 22231920 (+)
G378832 NA other downstream 1507044 22503752 ~ 22506270 (+)
G378868 NA other downstream 1605402 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1945584 22942205 ~ 23007315 (+)

Expression


Co-expression Network