G377241


Basic Information

Item Value
gene id G377241
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21022705 ~ 21023369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428788
aggaagcacagcaggcctacaaccatgcccatgccaggaccagggccagagttgaaatgacctttggcctcctgaaggcacgctttcactgccttcacaaattaagggtcagccctgttagggcatgtgatattactgtggcttgtgctgtcctccacaatgtggcctgcctgaggaaggagagggcccccagagtgccaccagccatggactgggacaatccggcaatcttccctgatgacgacagtggtcggctgctgagggaccaatatgtgttgaattattttagttagtatgtgtgctttcaattttggttaaatatgtcctgcggtggcagaggaatttgggtttttttgggttcgttttttgacaaatttggcctcttatgatgtttgtgcggtatactgtgtgtaatacaaggctgcagggaggctactgcatccattcatttgtctgttcagttgatgtgtatggatttgtcctgcatttattttagtgtgcagacatgcagggtgtgttatacacattcaaaggtctgtatatgtatcattttgtataatatgcttagattctgtgctttccatcttgtagagtcactgtgacttcagttttgaaaggagctgatggtttacctgctttgttttgtccttattcaataaaggaac

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU428788 True 665 lncRNA 0.45 1 21022705 21023369

Neighbor

gene id symbol gene type direction distance location
LOC110523398 LOC100534606 coding upstream 31329 20952149 ~ 20991376 (+)
ccar2 LOC106568504 coding upstream 78662 20923014 ~ 20944043 (+)
LOC110523395 LOC106568500 coding upstream 112068 20898121 ~ 20910637 (+)
LOC110522818 LOC106568484 coding upstream 124838 20881938 ~ 20897867 (+)
pnx LOC106568480 coding upstream 162943 20858342 ~ 20859762 (+)
LOC110522819 LOC106568526 coding downstream 27567 21050936 ~ 21099289 (+)
LOC110523400 LOC106568542 coding downstream 84760 21108129 ~ 21160149 (+)
npm2b LOC106592477 coding downstream 254199 21277568 ~ 21288531 (+)
LOC110523406 crybb1 coding downstream 450484 21473853 ~ 21477171 (+)
LOC110523407 LOC106568363 coding downstream 455316 21478685 ~ 21493435 (+)
G377240 NA non-coding upstream 2798 21019662 ~ 21019907 (+)
G377184 NA non-coding upstream 25997 20993705 ~ 20996708 (+)
G377188 LOC106581475 non-coding upstream 29729 20946529 ~ 20992976 (+)
G377198 NA non-coding upstream 100610 20921877 ~ 20922095 (+)
G377243 NA non-coding downstream 1595 21024964 ~ 21025268 (+)
G377251 NA non-coding downstream 10573 21033942 ~ 21034516 (+)
G377261 NA non-coding downstream 20320 21043689 ~ 21043996 (+)
G377272 NA non-coding downstream 48005 21071374 ~ 21071582 (+)
G377255 NA non-coding downstream 76962 21100331 ~ 21103100 (+)
LOC110522817 LOC106568462 other upstream 186146 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 264204 20508074 ~ 20759255 (+)
G377022 NA other upstream 425842 20591480 ~ 20596863 (+)
G376320 NA other upstream 1038857 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 2939340 18067350 ~ 18177035 (+)
G378660 NA other downstream 1149166 22172535 ~ 22231920 (+)
G378832 NA other downstream 1480383 22503752 ~ 22506270 (+)
G378868 NA other downstream 1578741 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1918923 22942205 ~ 23007315 (+)

Expression


Co-expression Network