G377255


Basic Information

Item Value
gene id G377255
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21100331 ~ 21103100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428805
acacacacacacatacactatgcTGATACATTTCacttgaaggcattcagttgtacaactgactaggtatccccctttccctttcccttctgGACAATTACCGACACATGCTAGGAACCATTTAGCAAAGTTCCATTCACTATTAGCATTCTTTAGCACTGTTGTCACCTAAACACTTTATACACATTGAAtttcatataaatatataaaaatattccATAAACTGTAGATTTGATGTGATATTTAACATGTAAACATACATTAGATTCAGTTGGATAGTAGTTATTGTATTACAAGTGTGTTATGCAACACCTCTACTCTTAAACATTGTATAAATCACTGTAGTGTCTGGTAGACATACCCAGACACATGGATCACATGCCATTCTGAACCTTAAGTCTACTGTCCGAAGCTGTTGGAGCATAAATCGCAGCGTGTGGACTGTCTTCTCTTCGTTCAAAATATTCTCTGAGCTCCAGCACCTGCTCAAACCACTGGATGTTGTGTGTGTAACGTTTTTATCTGCTATACTTTGGCCCTACTGTAGATGTGTTTGTGAGGGCAGACTGACAGCGGTTCAAATACCACAGCCGATGCACCTGAAAGCAAGGCAGAAGTcgtttttgtgtgtttgtttgttttgatgATGTCTTCCAAGTGTTATTTATTCACCGTGTGCTGTGTGGTTTGTGGCAGCAACCTCTGTTGTACTAATGTAAAGACTCCTCTGAAGGCACAGTTGGCGAAGGAAGAGTTGTAATGTTATAGTAatacaatattattattattgaaaaaaaaaagtatttcacccccctttttctccttaatttcgtgatatccaattacgatcttgtctcatcgctgcaactccccaacgggcttggtagaggcgaaggtcgagtcatgcgttctccgaaacatgacccgccaaaccgcgcttctaaACAcgtttaacccggaagccagctgcaccagtgtgtcggaggaaacaccgttcaactaacgaccgaggtcagcctgcaggcgcccggcccgccacaaggagtcgctagagcgcgatgagccaaataaaccccccccggccaaaccctcctctaacccggacgatgctgggccaattgtgcactgctgTATAGGACTCCTGTTCACAGCTGGTTGTCACACAGCTTGGAatcaaacctgggtctgtagtgacgcctcaagcactgcaatgcagtgccttagaccactgtgccactcggtaGGCAGTAATACAATATTATAATACAATGTTAGTCTGACATCTGAGGGGTGGTGGTTGTCAGGTGTTCATTGGAGACACTATTCAGACCTGATCAtttacatattttatattttggaATTATAAGACTTCTCTGATCTACAATGGGAcagtcatcctctctctcccttgtcaGTCCCAGCTGGTTTTGTCAGCCACTGCTCTCTCAAGACAAGTGAATTCTGGACCCATGTGTTTGTCTGGGACAATCAATGTTTGTCTGAGAAATACTGAAATAGGTATTTGATTACCGGTACATATAGGTCATGAACCTGCTGCAGTACATTAAGTCTAGTCTGTCTCACCTCACCCCCcttcacCAAACCTCACCTCGCCcttcacctcacctcaccccccaACCCAATCCGTTTACTTTTTGTCACCGTTCAAACTCACATCCTCCTCCAAATCTTTCTAACTACCCCATAACCTTCTTCtcccgctctgtgtgtgtgtgtctgtgtgcacgcACGTGttcgtgcatgtgtgtctgttttcCCCTTTGTAGTAATGTGTGCTCCTGCTCGTGTCAGTTAACACATTCTTGTCTGCATTGCTGTTCAGGGAGTATGGTTGAGAAGTGTGAAACTATGTTTGTTTGTGCTCACGAGACTGATTGCCTGTGCTCGTgacagtgcatgtgtgtgtgtaacctgggCTGTTCCACCTGACTGTTCCTCCCTCAGAATTACTCTGCACCTGAAGATCTGCCCCCCCTCACCTGCCCACTCCCAGGTGAGCCTTACCCCCGGATCATCATCACGCCCTCCTGTTTCCCAGTTTGACATCCAGGTGGAGTCTGAATACCAGGAGTCTGACCTCTACCCAATGGGTCATGACCTTTACCCCAGCATTAACCCCTGCCCTCTGAATGGCCGCTACCTGACCTCTAAGACTCAACGAGACCAGTACCAATACAAAAACCCACACTCTCATCCCTATGATGTGGGCAGCGAAACCTTGCTGTAGGTTGacagcacatagacacacagacacatataaCCAGTTGCGAAATCTTCAAAACTATACAAGACAGTTTCTCTCCAGTTTATATTAATAAGAATGGCCTTTTAACCCGAGGTACCTATCAGTTATTATAAGAAGACAGACAAAGTATAACTTGTATATATTCAGTGCCCCTGCCCATTACAACAATTTATTACATCAACAAAAAAGAAACAACTAAAACTATATTAATTACTTGATTGCAAATGTATCTGTACAATTATAAAAAATGAAGAGAAAAATATAGAAATATAGAAACGTGAGCATTGTGATAATAATGGTTTAAAAAGgattgatgtgttgtttattgcaTTTATTAGGTATTTTGTTTTCAGTGCATTCACCTTTATGAATATATGTGTATAAATGACTGTTGGATAAAGTGAGATACTAATATCAGAGTGTACTTACTTTGGATTGTAAAGATTTACAAATGCATGTTAATAAAATAGTATTAAAAAACCTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU428805 True 2750 lncRNA 0.43 2 21100331 21103100

Neighbor

gene id symbol gene type direction distance location
LOC110522819 LOC106568526 coding upstream 1042 21050936 ~ 21099289 (+)
LOC110523398 LOC100534606 coding upstream 108955 20952149 ~ 20991376 (+)
ccar2 LOC106568504 coding upstream 156288 20923014 ~ 20944043 (+)
LOC110523395 LOC106568500 coding upstream 189694 20898121 ~ 20910637 (+)
LOC110522818 LOC106568484 coding upstream 202464 20881938 ~ 20897867 (+)
LOC110523400 LOC106568542 coding downstream 5029 21108129 ~ 21160149 (+)
npm2b LOC106592477 coding downstream 174468 21277568 ~ 21288531 (+)
LOC110523406 crybb1 coding downstream 370753 21473853 ~ 21477171 (+)
LOC110523407 LOC106568363 coding downstream 375585 21478685 ~ 21493435 (+)
LOC110523409 LOC106565015 coding downstream 415457 21518557 ~ 21521828 (+)
G377272 NA non-coding upstream 28749 21071374 ~ 21071582 (+)
G377261 NA non-coding upstream 56335 21043689 ~ 21043996 (+)
G377251 NA non-coding upstream 65815 21033942 ~ 21034516 (+)
G377243 NA non-coding upstream 75063 21024964 ~ 21025268 (+)
G377241 NA non-coding upstream 76962 21022705 ~ 21023369 (+)
G377292 NA non-coding downstream 9794 21112894 ~ 21125541 (+)
G377293 NA non-coding downstream 44231 21147331 ~ 21151990 (+)
G377294 NA non-coding downstream 49314 21152414 ~ 21153105 (+)
G377299 NA non-coding downstream 57699 21160799 ~ 21161204 (+)
LOC110522817 LOC106568462 other upstream 263772 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 341830 20508074 ~ 20759255 (+)
G377022 NA other upstream 503468 20591480 ~ 20596863 (+)
G376320 NA other upstream 1116483 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 3016966 18067350 ~ 18177035 (+)
G378660 NA other downstream 1069435 22172535 ~ 22231920 (+)
G378832 NA other downstream 1400652 22503752 ~ 22506270 (+)
G378868 NA other downstream 1499010 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1839192 22942205 ~ 23007315 (+)

Expression


Co-expression Network