G377293


Basic Information

Item Value
gene id G377293
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21147331 ~ 21151990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU428847
gatactggtcctctgtcagtcgggttgttactgggtactggtcctctgtcagtggggttgttactggatactggtcctctgtcagtcgggttgttactggatactggtcccctgtcagtggggttgttactggatactggtcctctgtcagtggggttgttactggatactggtcctctgtcagtcgggttgttattgatactggtcctctgtcagtcgggttgttattgatactggtcctctgtcagtggggttgttattggatactggtcctctgtcagtggggttgttattgatactggtcctctgtcagtggggttgttattggatactggtcctctgtcagtggggttgtta
>TU428848
gatactggtcctctgtcagtcgggttgttactgggtactggtcctctgtcagtggggttgttactggatactggtcctctgtcagtcgggttgttactggatactggtcccctgtcagtggggttgttactggatactggtcctctgtcagtggggttgttactggatactggtcctctgtcagtcgggttgttattgatactggtcctctgtcagtcgggttgttattgatactggtcctctgtcagtcgggttgttattgatactggtcctctgtcagcgGGGTTgttactggtcctctgtcagtggggttgttattGGATATGGGTCCTCTGTCAgcggggttgttactggatatgggtcctctgtcagtcgggttgttactggata

Function

NR:

description
PREDICTED: myomegalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU428847 False 357 lncRNA 0.50 3 21147331 21151990
TU428848 True 390 lncRNA 0.51 3 21147331 21150450

Neighbor

gene id symbol gene type direction distance location
LOC110522819 LOC106568526 coding upstream 48042 21050936 ~ 21099289 (+)
LOC110523398 LOC100534606 coding upstream 155955 20952149 ~ 20991376 (+)
ccar2 LOC106568504 coding upstream 203288 20923014 ~ 20944043 (+)
LOC110523395 LOC106568500 coding upstream 236694 20898121 ~ 20910637 (+)
LOC110522818 LOC106568484 coding upstream 249464 20881938 ~ 20897867 (+)
npm2b LOC106592477 coding downstream 125578 21277568 ~ 21288531 (+)
LOC110523406 crybb1 coding downstream 321863 21473853 ~ 21477171 (+)
LOC110523407 LOC106568363 coding downstream 326695 21478685 ~ 21493435 (+)
LOC110523409 LOC106565015 coding downstream 366567 21518557 ~ 21521828 (+)
LOC110523408 LOC106565015 coding downstream 375565 21527555 ~ 21534161 (+)
G377292 NA non-coding upstream 21790 21112894 ~ 21125541 (+)
G377255 NA non-coding upstream 44231 21100331 ~ 21103100 (+)
G377272 NA non-coding upstream 75749 21071374 ~ 21071582 (+)
G377261 NA non-coding upstream 103335 21043689 ~ 21043996 (+)
G377251 NA non-coding upstream 112815 21033942 ~ 21034516 (+)
G377294 NA non-coding downstream 424 21152414 ~ 21153105 (+)
LOC110523400 LOC106568542 non-coding downstream 7141 21108129 ~ 21160149 (+)
G377299 NA non-coding downstream 8809 21160799 ~ 21161204 (+)
G377301 NA non-coding downstream 10464 21162454 ~ 21162971 (+)
G377303 NA non-coding downstream 13139 21165129 ~ 21165486 (+)
LOC110522817 LOC106568462 other upstream 310772 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 388830 20508074 ~ 20759255 (+)
G377022 NA other upstream 550468 20591480 ~ 20596863 (+)
G376320 NA other upstream 1163483 19983261 ~ 19983848 (+)
arhgef28a LOC106568988 other upstream 3063966 18067350 ~ 18177035 (+)
G378660 NA other downstream 1020545 22172535 ~ 22231920 (+)
G378832 NA other downstream 1351762 22503752 ~ 22506270 (+)
G378868 NA other downstream 1450120 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1790302 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2471974 23623921 ~ 23678038 (+)

Expression


Co-expression Network