G377523


Basic Information

Item Value
gene id G377523
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21577204 ~ 21577584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU429116
ctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctcctttggatgtttaaagcttgggaaatctttttgtatccaaatccagctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcgtgatgctctctgcgcttttgacggacctctgagactatcacagtgcaggtgcatttgagacttgattacacacaggtagattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU429116 True 381 lncRNA 0.43 1 21577204 21577584

Neighbor

gene id symbol gene type direction distance location
LOC110523408 LOC106565015 coding upstream 43043 21527555 ~ 21534161 (+)
LOC110523409 LOC106565015 coding upstream 55376 21518557 ~ 21521828 (+)
LOC110523407 LOC106568363 coding upstream 83769 21478685 ~ 21493435 (+)
LOC110523406 crybb1 coding upstream 100033 21473853 ~ 21477171 (+)
npm2b LOC106592477 coding upstream 288673 21277568 ~ 21288531 (+)
LOC110523411 LOC106568349 coding downstream 1406 21578990 ~ 21597442 (+)
LOC110523412 LOC106568387 coding downstream 24449 21602033 ~ 21609081 (+)
LOC110523413 LOC106568345 coding downstream 38616 21616200 ~ 21622938 (+)
LOC110523414 cetn3 coding downstream 55948 21633532 ~ 21635979 (+)
LOC110523415 LOC106568324 coding downstream 91837 21669421 ~ 21684268 (+)
G377520 NA non-coding upstream 4932 21571209 ~ 21572272 (+)
G377517 NA non-coding upstream 7990 21568954 ~ 21569214 (+)
G377513 NA non-coding upstream 11598 21565274 ~ 21565606 (+)
G377505 NA non-coding upstream 26643 21550337 ~ 21550561 (+)
G377494 NA non-coding upstream 58958 21517745 ~ 21518246 (+)
G377527 NA non-coding downstream 11911 21589495 ~ 21591705 (+)
G377533 NA non-coding downstream 34535 21612119 ~ 21612381 (+)
G377535 NA non-coding downstream 37494 21615078 ~ 21615793 (+)
LOC110523419 LOC106568313 non-coding downstream 188163 21765705 ~ 21769900 (+)
G377619 NA non-coding downstream 202804 21780388 ~ 21780616 (+)
LOC110523400 LOC106568542 other upstream 418285 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 740645 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 818703 20508074 ~ 20759255 (+)
G377022 NA other upstream 980341 20591480 ~ 20596863 (+)
G376320 NA other upstream 1593356 19983261 ~ 19983848 (+)
G378660 NA other downstream 594951 22172535 ~ 22231920 (+)
G378832 NA other downstream 926168 22503752 ~ 22506270 (+)
G378868 NA other downstream 1024526 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1364708 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2046380 23623921 ~ 23678038 (+)

Expression


Co-expression Network