G377535


Basic Information

Item Value
gene id G377535
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21615078 ~ 21615793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU429139
catatttattaaatgaacacgaAAATAACCAAGAGAAAcgaccgaaaacagttctggctggtgcagacacataacagaaaacaaacacccaccaaatacaggtggaaaaaggctacctaagtatgattctcaatcagagacaactaacgacacctgcctctgattgagaaccataccaggccaaactcaaaaacaccatagaaaaacaaacatagactgcccaccccaactcaggccctgaccatactaaaacaaagacaaaacaaaggaactaaggtcagaacgtgacagggcctggctcccaagtgaatgggcctatgccctcccatggctgcgcccctacCCAGTCATGGAAAATCCATAAATTATGGCCtaaattaactaggcaagtcagttaagaacaaattattatttgcaatgatggcctaggatcagtgggttaacgtccttgttcaggggcagaatgacagatttgtatcttgtcagctcagggatttgatctatcaacctttcggttactggcacaatgCCCTAAATACTAGACTACCTATCACCCCAATTGATTATAACTCAGaaaaactttttaaatgtttgcatgttgcctttatatttttgtctATCATGAAATGCTCTTACTAGCCTGTTCTTCTTTTCACAAGTAGATGGCGGTAAGGGACTATAGTATTGTCATTTTCTGTAAGAAGGTTCATATGGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU429139 True 716 lncRNA 0.41 1 21615078 21615793

Neighbor

gene id symbol gene type direction distance location
LOC110523412 LOC106568387 coding upstream 5997 21602033 ~ 21609081 (+)
LOC110523411 LOC106568349 coding upstream 17636 21578990 ~ 21597442 (+)
LOC110523408 LOC106565015 coding upstream 80917 21527555 ~ 21534161 (+)
LOC110523409 LOC106565015 coding upstream 93250 21518557 ~ 21521828 (+)
LOC110523407 LOC106568363 coding upstream 121643 21478685 ~ 21493435 (+)
LOC110523413 LOC106568345 coding downstream 407 21616200 ~ 21622938 (+)
LOC110523414 cetn3 coding downstream 17739 21633532 ~ 21635979 (+)
LOC110523415 LOC106568324 coding downstream 53628 21669421 ~ 21684268 (+)
LOC110522823 NA coding downstream 73375 21689168 ~ 21695622 (+)
LOC110523419 LOC106568313 coding downstream 149912 21765705 ~ 21769900 (+)
G377533 NA non-coding upstream 2697 21612119 ~ 21612381 (+)
G377527 NA non-coding upstream 23373 21589495 ~ 21591705 (+)
G377523 NA non-coding upstream 37494 21577204 ~ 21577584 (+)
G377520 NA non-coding upstream 42806 21571209 ~ 21572272 (+)
G377517 NA non-coding upstream 45864 21568954 ~ 21569214 (+)
G377619 NA non-coding downstream 164595 21780388 ~ 21780616 (+)
G377628 NA non-coding downstream 174788 21790581 ~ 21790798 (+)
G377629 NA non-coding downstream 175085 21790878 ~ 21791428 (+)
G377630 NA non-coding downstream 175709 21791502 ~ 21791809 (+)
LOC110523400 LOC106568542 other upstream 456159 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 778519 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 856577 20508074 ~ 20759255 (+)
G377022 NA other upstream 1018215 20591480 ~ 20596863 (+)
G376320 NA other upstream 1631230 19983261 ~ 19983848 (+)
G378660 NA other downstream 556742 22172535 ~ 22231920 (+)
G378832 NA other downstream 887959 22503752 ~ 22506270 (+)
G378868 NA other downstream 986317 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1326499 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2008171 23623921 ~ 23678038 (+)

Expression


Co-expression Network