G377628


Basic Information

Item Value
gene id G377628
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21790581 ~ 21790798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU429254
gtcgtatattgcacacatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagttttccacaagccacctgggagacacaccaaacatgtggaagaatgtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacaccctgaac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU429254 True 218 lncRNA 0.40 1 21790581 21790798

Neighbor

gene id symbol gene type direction distance location
LOC110523419 LOC106568313 coding upstream 20681 21765705 ~ 21769900 (+)
LOC110522823 NA coding upstream 94959 21689168 ~ 21695622 (+)
LOC110523415 LOC106568324 coding upstream 106313 21669421 ~ 21684268 (+)
LOC110523414 cetn3 coding upstream 154602 21633532 ~ 21635979 (+)
LOC110523413 LOC106568345 coding upstream 167643 21616200 ~ 21622938 (+)
LOC110523420 LOC106568307 coding downstream 7542 21798340 ~ 21808924 (+)
LOC110523421 LOC106568255 coding downstream 25980 21816778 ~ 21822877 (+)
LOC110523423 LOC106568289 coding downstream 51270 21842068 ~ 21847237 (+)
LOC110523424 LOC106567937 coding downstream 163285 21954083 ~ 21958510 (+)
LOC110522824 LOC106563065 coding downstream 170677 21961475 ~ 21990926 (+)
G377619 NA non-coding upstream 9965 21780388 ~ 21780616 (+)
G377535 NA non-coding upstream 174788 21615078 ~ 21615793 (+)
G377533 NA non-coding upstream 178200 21612119 ~ 21612381 (+)
G377527 NA non-coding upstream 198876 21589495 ~ 21591705 (+)
G377629 NA non-coding downstream 80 21790878 ~ 21791428 (+)
G377630 NA non-coding downstream 704 21791502 ~ 21791809 (+)
G377650 NA non-coding downstream 43919 21834717 ~ 21835040 (+)
G377658 NA non-coding downstream 58701 21849499 ~ 21850193 (+)
LOC110523400 LOC106568542 other upstream 631662 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 954022 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1032080 20508074 ~ 20759255 (+)
G377022 NA other upstream 1193718 20591480 ~ 20596863 (+)
G376320 NA other upstream 1806733 19983261 ~ 19983848 (+)
G378660 NA other downstream 381737 22172535 ~ 22231920 (+)
G378832 NA other downstream 712954 22503752 ~ 22506270 (+)
G378868 NA other downstream 811312 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1151494 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1833166 23623921 ~ 23678038 (+)

Expression


Co-expression Network