G377656


Basic Information

Item Value
gene id G377656
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21854183 ~ 21854828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU429284
atggccttactggagagctcagtgacttttaatgtgccaccgtcataggatgccacctttcccaGCAAGTCAGTTTTGTGGGATGTATGCCTTGCTAGAGCTAccactgtcaactgtaagtgctgttattgagaAGTGGAAACGTATAGGAGCAGCAatggctcagccatgaagtggtagaccacacaagctcacagaacgggaccgccgagtactGAAGCGCGTTGCAACACTTACTattggaagcaaagtcagcagcttaatgaaatgggtttccatggctgagcagccgcacacaagcctaagatcctcatgtgcaatgccaagcatcggctggagaggtgtaaagcttgcagccattggactctggagcatcgttctctggagttatgaatcacgtttcaccatctggcagtccaatggacgaatctgggtttggcggatgccctGCCTGGAGAAAACTACCtccccgaatgcatagtgccagttTGGAAGTTTAGTGGaagagaaataatggtctggggatgttgttcatggttcgggccccttagttccagtgaagggaaatattttAGTGGAAACATTtactggaaagccttcccagaagagtggaagctgttatagcaccaaaggggggaccaactcc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU429284 True 646 lncRNA 0.49 1 21854183 21854828

Neighbor

gene id symbol gene type direction distance location
LOC110523423 LOC106568289 coding upstream 6946 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 31306 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 45259 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 84283 21765705 ~ 21769900 (+)
LOC110522823 NA coding upstream 158561 21689168 ~ 21695622 (+)
LOC110523424 LOC106567937 coding downstream 99255 21954083 ~ 21958510 (+)
LOC110522824 LOC106563065 coding downstream 106647 21961475 ~ 21990926 (+)
LOC100135946 LOC100135946 coding downstream 142828 21997656 ~ 22000508 (+)
LOC110523429 acty coding downstream 191143 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 335540 22190368 ~ 22221369 (+)
G377658 NA non-coding upstream 3990 21849499 ~ 21850193 (+)
G377650 NA non-coding upstream 19143 21834717 ~ 21835040 (+)
G377630 NA non-coding upstream 62374 21791502 ~ 21791809 (+)
G377629 NA non-coding upstream 62755 21790878 ~ 21791428 (+)
G378403 NA non-coding downstream 5766 21860594 ~ 21865869 (+)
G378406 NA non-coding downstream 11160 21865988 ~ 21866406 (+)
G378410 NA non-coding downstream 12234 21867062 ~ 21867445 (+)
G378431 NA non-coding downstream 40213 21895041 ~ 21895265 (+)
G378434 NA non-coding downstream 41503 21896331 ~ 21896693 (+)
LOC110523400 LOC106568542 other upstream 695264 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1017624 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1095682 20508074 ~ 20759255 (+)
G377022 NA other upstream 1257320 20591480 ~ 20596863 (+)
G376320 NA other upstream 1870335 19983261 ~ 19983848 (+)
G378660 NA other downstream 317707 22172535 ~ 22231920 (+)
G378832 NA other downstream 648924 22503752 ~ 22506270 (+)
G378868 NA other downstream 747282 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1087464 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1769136 23623921 ~ 23678038 (+)

Expression


Co-expression Network