G378472


Basic Information

Item Value
gene id G378472
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21945713 ~ 21945968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430198
gcagcaaaacagttcattcagcctcatttactgctttAAAAAAAGCATAGCTAATATGGCAGACTTGCTTAAATAAatttggtttctactgacaattgagatgtacaaactacgacataaggggacgacaagcggataagaggcaatttCATAATTTTATTTATGAGCGAGCTAGGAGaaacgtagtcaatataactatttgatCAGCACTTTTATAATGTACAGCGACATAATttagaacatgggccgttcttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430198 True 256 lncRNA 0.36 1 21945713 21945968

Neighbor

gene id symbol gene type direction distance location
LOC110523423 LOC106568289 coding upstream 98476 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 122836 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 136789 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 175813 21765705 ~ 21769900 (+)
LOC110522823 NA coding upstream 250091 21689168 ~ 21695622 (+)
LOC110523424 LOC106567937 coding downstream 8115 21954083 ~ 21958510 (+)
LOC110522824 LOC106563065 coding downstream 15507 21961475 ~ 21990926 (+)
LOC100135946 LOC100135946 coding downstream 51688 21997656 ~ 22000508 (+)
LOC110523429 acty coding downstream 100003 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 244400 22190368 ~ 22221369 (+)
G378467 NA non-coding upstream 8389 21936930 ~ 21937324 (+)
G378466 NA non-coding upstream 11743 21933681 ~ 21933970 (+)
G378465 NA non-coding upstream 14071 21931201 ~ 21931642 (+)
G378455 NA non-coding upstream 24781 21920232 ~ 21920932 (+)
G378454 NA non-coding upstream 25983 21919502 ~ 21919730 (+)
G378473 NA non-coding downstream 100 21946068 ~ 21946407 (+)
G378474 NA non-coding downstream 1448 21947416 ~ 21947627 (+)
G378476 NA non-coding downstream 3117 21949085 ~ 21949336 (+)
G378478 NA non-coding downstream 6767 21952735 ~ 21953001 (+)
G378485 NA non-coding downstream 26620 21972588 ~ 21974098 (+)
LOC110523400 LOC106568542 other upstream 786794 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1109154 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1187212 20508074 ~ 20759255 (+)
G377022 NA other upstream 1348850 20591480 ~ 20596863 (+)
G376320 NA other upstream 1961865 19983261 ~ 19983848 (+)
G378660 NA other downstream 226567 22172535 ~ 22231920 (+)
G378832 NA other downstream 557784 22503752 ~ 22506270 (+)
G378868 NA other downstream 656142 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 996324 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1677996 23623921 ~ 23678038 (+)

Expression


Co-expression Network