G378485


Basic Information

Item Value
gene id G378485
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21972588 ~ 21974098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430211
acagagacacatacactatagatcacctttactccatacacagagacacatacactctacatcacctttactccatacacagagacacatacactatagatcacctttactccatacacagagacacatacactatagatcacctttactccatacacagagacacatacactctacaccacctttactccatacacagagacacatacactatagatcacctttactccatacacagagacacatacactatagatcacctttactccatacacagagacacatacactcTACATCACatttactccatacacagagacacatacactctacatcacctttactccatacacGGAGACACATacactctagatcacctttactccaaatacagagacacatacagtctagaccacctttactccatacacagagacacatacagtctagaccacctttactccgtacacagagacacatacagtctagaccacctttactccatacacagagacacatacactatagatcacctttactccatacacagagacacatacactaTAGATCACCgttactccatacacagagacacatacactctacatcacctttactccatacacagagacacatacactaTAGatcacctttactccatacacagagacacatacactctagatcacctttactccatacacagagacacatacactatagatcacctttactccacacacagagacacatacactctagatcacctttactccatacacagagacacatacactctagatcacctttactccatacacagagacacatacactatagatcacctttactccatacacagagacacatacagtcTAGATCACatttactccatacacagagacacatacactcTAGATCacttttactccatacacagagacacatacactatagatcacctttactccactcacagagacacatacagtgctctccctcaccctccatttggcaaatctgaccataactctatcctcctgattccttttTATAAGCAAACACTCAAACAGAAAGTAACAGTGAcgcgctcaatacagaagtggtttgATGAAGCGgatactaagctacaggactgtttcgctagcacagattggaat

Function

NR:

description
Ice nucleation protein inaU

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430211 True 1160 lncRNA 0.41 2 21972588 21974098

Neighbor

gene id symbol gene type direction distance location
LOC110523424 LOC106567937 coding upstream 14078 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 125351 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 149711 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 163664 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 202688 21765705 ~ 21769900 (+)
LOC100135946 LOC100135946 coding downstream 23558 21997656 ~ 22000508 (+)
LOC110523429 acty coding downstream 71873 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 216270 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 794567 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 900072 22874170 ~ 22903435 (+)
G378478 NA non-coding upstream 19587 21952735 ~ 21953001 (+)
G378476 NA non-coding upstream 23252 21949085 ~ 21949336 (+)
G378474 NA non-coding upstream 24961 21947416 ~ 21947627 (+)
G378473 NA non-coding upstream 26181 21946068 ~ 21946407 (+)
G378472 NA non-coding upstream 26620 21945713 ~ 21945968 (+)
G378489 NA non-coding downstream 6833 21980931 ~ 21981344 (+)
G378486 NA non-coding downstream 8414 21982512 ~ 22005024 (+)
G378512 kctd9 non-coding downstream 59742 22033840 ~ 22036950 (+)
G378513 NA non-coding downstream 63285 22037383 ~ 22037854 (+)
G378570 NA non-coding downstream 64896 22038994 ~ 22039248 (+)
LOC110523400 LOC106568542 other upstream 813669 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1136029 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1214087 20508074 ~ 20759255 (+)
G377022 NA other upstream 1375725 20591480 ~ 20596863 (+)
G376320 NA other upstream 1988740 19983261 ~ 19983848 (+)
G378660 NA other downstream 198437 22172535 ~ 22231920 (+)
G378832 NA other downstream 529654 22503752 ~ 22506270 (+)
G378868 NA other downstream 628012 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 968194 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1649866 23623921 ~ 23678038 (+)

Expression


Co-expression Network