G378489


Basic Information

Item Value
gene id G378489
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21980931 ~ 21981344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430218
ctaaacaaccaccaatcggtcgccgaagggacgggcaccttcattggacaagaaccatggtcattggatgaaccaaacccacaaggtgatagctgggatagagcacctgcccaggacaaggctcaatatcctcccaccaccaagctgggcaacgtggatcaaaagttaggacacatcgggcgccgaagggtctggtcaaaccactaaatcggtcgccggcgggaaaatgtccaaagtaccatggttctgagggtctgacttccctcaaaactgtccgttactcattttctattcggactgagcagtttgacaccacccccgtctctctaggacatggaagtcctgttgtcaaaaaccaggtttctgaaatcgcgccggtacctgtctggtcgacccgccactgagtgtgtaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430218 True 414 lncRNA 0.53 1 21980931 21981344

Neighbor

gene id symbol gene type direction distance location
LOC110523424 LOC106567937 coding upstream 22421 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 133694 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 158054 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 172007 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 211031 21765705 ~ 21769900 (+)
LOC100135946 LOC100135946 coding downstream 16312 21997656 ~ 22000508 (+)
LOC110523429 acty coding downstream 64627 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 209024 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 787321 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 892826 22874170 ~ 22903435 (+)
G378485 NA non-coding upstream 6833 21972588 ~ 21974098 (+)
G378478 NA non-coding upstream 27930 21952735 ~ 21953001 (+)
G378476 NA non-coding upstream 31595 21949085 ~ 21949336 (+)
G378474 NA non-coding upstream 33304 21947416 ~ 21947627 (+)
G378473 NA non-coding upstream 34524 21946068 ~ 21946407 (+)
G378486 NA non-coding downstream 1168 21982512 ~ 22005024 (+)
G378512 kctd9 non-coding downstream 52496 22033840 ~ 22036950 (+)
G378513 NA non-coding downstream 56039 22037383 ~ 22037854 (+)
G378570 NA non-coding downstream 57650 22038994 ~ 22039248 (+)
G378571 NA non-coding downstream 58005 22039349 ~ 22039566 (+)
LOC110523400 LOC106568542 other upstream 822012 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1144372 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1222430 20508074 ~ 20759255 (+)
G377022 NA other upstream 1384068 20591480 ~ 20596863 (+)
G376320 NA other upstream 1997083 19983261 ~ 19983848 (+)
G378660 NA other downstream 191191 22172535 ~ 22231920 (+)
G378832 NA other downstream 522408 22503752 ~ 22506270 (+)
G378868 NA other downstream 620766 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 960948 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 1642620 23623921 ~ 23678038 (+)

Expression


Co-expression Network