G378486


Basic Information

Item Value
gene id G378486
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21982512 ~ 22005024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430212
tacggccctctctctgtcaggcccgtccttgagtgctttttagacactttaagaaatcacgatggatgcagattgctattaatcctccgtgcaactggtgattgaaaacgtgcatctggtaacccaaaatttcaaatatggttcaaaatgaatttaaaggcacccctctcattgttccccgctatgggagcaccccactaaggccctgtctcggtcggggccgtcctgagtgctttatagacactttaagaaatcgcgatggatgcagattgctattaatcctccgtgcaactggtgattgaaaacgtgcaactggtgattgaaaacgtgcacctggtcacccaaaacacggttctctatgcggttagcggtgttccatatattcatgtccgcttatggcgcaccctactacggacctttatcaatgggggccggtccgaattatttatggaaggtctgatgatgattttttttttttccaccatctctttctctctctgccggggccggccaagagtgctttatggacggtttaaaacatgactatggatgcaaatgctcattttcctccgtgcacctggtgattgaaaacgtgcatctggtaacccaaaaattataaaagggttttaaatacttttacccgtcattctattgatatagcccgctaggggagtgccccactacggccctgtctcggtcggggccgtccttggtgctttatggacactttaagatattacgatggatgcagattgctattaatcctccgtgcaactggtgattgaaaacgtgcatctggtaacccaaaaattataaaactgttttaaatcattttaccggtcattctattgatatagcccgctaggggagtgccccactacggccctgtctcggtcggggccgtccttggtgctttatggac
>TU430214
tacggccctctctctgtcaggcccgtccttgagtgctttttagacactttaagaaatcacgatggatgcagattgctattaatcctccgtgcaactggtgattgaaaacgtgcatctggtaacccaaaatttcaaatatggttcaaaatgaatttaaaggcacccctctcattgttccccgctatgggagcaccccactaaggccctgtctcggtcggggccgtccttgggtgctttttagacagtttaagaaatcacgatggatgcagattgctattaatcctccgtgcaactggtgattgaaaacgtgcatctggtaacccaaaaattataaaactgttttaaatcattttaccggtcattctattgatatagcccgctaggggagtgccccactacggccctgtctcggtcggggccgtccttggtgctttatggac
>TU430215
tacggccctctctctgtcaggcccgtccttgagtgctttttagacactttaagaaatcacgatggatgcagattgctattaatcctccgtgcaactggtgattgaaaacgtgcatctggtaacccaaaatttcaaatatggttcaaaatgaatttaaaggcacccctctcattgttccccgctatgggagcaccccactaaggccctgtctcggtcggggccAGTACTCTGCTCTGTGAGTCGTCTCCCTGGAGAAGACAGAGTCAGAGGAGCTGCTGGTGTTTGGACCCAATGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430212 False 922 lncRNA 0.47 2 21982512 21983631
TU430214 False 440 lncRNA 0.47 3 21982512 21984025
TU430215 True 296 lncRNA 0.50 2 21982512 22005024

Neighbor

gene id symbol gene type direction distance location
LOC110523424 LOC106567937 coding upstream 24002 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 135275 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 159635 21816778 ~ 21822877 (+)
LOC110523420 LOC106568307 coding upstream 173588 21798340 ~ 21808924 (+)
LOC110523419 LOC106568313 coding upstream 212612 21765705 ~ 21769900 (+)
LOC110523429 acty coding downstream 40947 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 185344 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 763641 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 869146 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 937181 22942205 ~ 23007315 (+)
G378489 NA non-coding upstream 1168 21980931 ~ 21981344 (+)
G378485 NA non-coding upstream 8414 21972588 ~ 21974098 (+)
G378478 NA non-coding upstream 29511 21952735 ~ 21953001 (+)
G378476 NA non-coding upstream 33176 21949085 ~ 21949336 (+)
G378474 NA non-coding upstream 34885 21947416 ~ 21947627 (+)
G378512 kctd9 non-coding downstream 28816 22033840 ~ 22036950 (+)
G378513 NA non-coding downstream 32359 22037383 ~ 22037854 (+)
G378570 NA non-coding downstream 33970 22038994 ~ 22039248 (+)
G378571 NA non-coding downstream 34325 22039349 ~ 22039566 (+)
G378573 NA non-coding downstream 35367 22040391 ~ 22040640 (+)
LOC110523400 LOC106568542 other upstream 823593 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1145953 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1224011 20508074 ~ 20759255 (+)
G377022 NA other upstream 1385649 20591480 ~ 20596863 (+)
G376320 NA other upstream 1998664 19983261 ~ 19983848 (+)
G378660 NA other downstream 167511 22172535 ~ 22231920 (+)
G378832 NA other downstream 498728 22503752 ~ 22506270 (+)
G378868 NA other downstream 597086 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1618940 23623921 ~ 23678038 (+)

Expression


Co-expression Network