G378512 (kctd9)


Basic Information

Item Value
gene id G378512
gene name kctd9
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22033840 ~ 22036950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430244
AGCCTTTATTGCAAAAGACATAAGACAGTAATTATACAGTGATAGTGTGATACAAAAATAGAACAACTTTTCACAATGATAAAGTGTAGCACCATGTGATGGAAATCCAACCCCTGGCATGGAGAAGATGGTCCATGTAGGATAATGTACATGTGGACCCATTAAAGTGAGACTCAGCCATATAACTTTTGCCATGAACCTCAGATTCACACTGCTGCAACGTGATAGCTGCGAGACCAAAACAGCGAGAAGTTTAGCCTCACACCGTTTGTTGTTGCGGAAGTTGGCCCGAATCTGCCGTATCTACCTTCAAAATACATATATTATTATCCAAACATGTAGAACCTTTTACGCCATATATACAAACATGTAGAACCTTTTACGCCATATATACAAACATGTGTACCAGAACTAAAACATTCCTGGGTCTCGTTTCACATTCACTCATGTCAGAGGAACAACCACTGCCCTCGGGCAGCTAAGTGACTCCTAAGGGTTGATATAGTATTGGGCAACTAGTCTCTTCTGAGAAGAGAAAATCAGTGGTGAGCTACACAGGGGGTTGGGAGGAATGACTTAAGGAccaggagtgtgtttgtgtggggttCAGTGGAGGAGTAGCACAATCTGAGACGTGTACGATAACCCTACTGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGGGACATGTGCAGTGGGGTTATCGCACACGCTGGGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGAGTCAGCATCTCTTCAAAGATGGCTCCCTTCACGTTGGAGCCCCGAAGGTTAGCTTCCTGTAGATCGCATCCAGACAGGTCACAgttctgagagagagggggagaaagagagggagggagctatGTTTGAgaggtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacctccaGGTCTGTGCCAGCCAGTGTAGCTCCTCTCAGGTTGCAGTTTTTCAGCTTGGCGTTCTTCAGTGTGGCAACTCGCAGGTTGATACCTGTCATCTGACTACCCTCCATGTCCACCCCCTTTAGGTTGGCACCTAACACACACCAATACAAATCCAAGTATGATCGAAAAGATATTGAACCTTGcaatccaagtgtgtgtgtgtgttgagtcaaGTCAAATTTGTTTATATGTGCGTGTTACCCTCCATGTTGGCTTTGACTCCAGCAGGGTCCTCAAAGTTACAGCCTCTCAGAGATGCACCCTCCGCATTAGAACACAGCATCTTAACACCCTGTAGGTTAGctccctgtaacacacacacacagtaacacacgtCAAGGCAGGCTGAGGACAGGTCTGCCCGCTCCAGGTTGGCACCACTGAGGTTGGCGTGAGTGAGGTTGGCAGCTCTCAGGTTGGCCATCTTAAAGTTGATGTAGCGCAGGTCCAGGCGAGACAGGTCTGCACCGCTGAAGTTca
>TU430245
AGCCTTTATTGCAAAAGACATAAGACAGTAATTATACAGTGATAGTGTGATACAAAAATAGAACAACTTTTCACAATGATAAAGTGTAGCACCATGTGATGGAAATCCAACCCCTGGCATGGAGAAGATGGTCCATGTAGGATAATGTACATGTGGACCCATTAAAGTGAGACTCAGCCATATAACTTTTGCCATGAACCTCAGATTCACACTGCTGCAACGTGATAGCTGCGAGACCAAAACAGCGAGAAGTTTAGCCTCACACCGTTTGTTGTTGCGGAAGTTGGCCCGAATCTGCCGTATCTACCTTCAAAATACATATATTATTATCCAAACATGTAGAACCTTTTACGCCATATATACAAACATGTAGAACCTTTTACGCCATATATACAAACATGTGTACCAGAACTAAAACATTCCTGGGTCTCGTTTCACATTCACTCATGTCAGAGGAACAACCACTGCCCTCGGGCAGCTAAGTGACTCCTAAGGGTTGATATAGTATTGGGCAACTAGTCTCTTCTGAGAAGAGAAAATCAGTGGTGAGCTACACAGGGGGTTGGGAGGAATGACTTAAGGAccaggagtgtgtttgtgtggggttCAGTGGAGGAGTAGCACAATCTGAGACGTGTACGATAACCCTACTGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGGGACATGTGCAGTGGGGTTATCGCACACGCTGGGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGAGTCAGCATCTCTTCAAAGATGGCTCCCTTCACGTTGGAGCCCCGAAGGTTAGCTTCCTGTAGATCGCATCCAGACAGGTCACAgttctgagagagagggggagaaagagagggagggagctatGTTTGAgaggtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacctccaGGTCTGTGCCAGCCAGTGTAGCTCCTCTCAGGTTGCAGTTTTTCAGCTTGGCGTTCTTCAGTGTGGCAACTCGCAGGTTGATACCTGTCATCTGACTACCCTCCATGTCCACCCCCTTTAGGTTGGCACCTCCATGTTGGCTTTGACTCCAGCAGGGTCCTCAAAGTTACAGCCTCTCAGAGATGCACCCTCCGCATTAGAACACAGCATCTTAACACCCTGTAGGTTAGctccctgtaacacacacacacagtaacacacgtCAAGGCAGGCTGAGGACAGGTCTGCCCGCTCCAGGTTGGCACCACTGAGGTTGGCGTGAGTGAGGTTGGCAGCTCTCAGGTTGGCCATCTTAAAGTTGATGTAGCGCAGGTCCAGGCGAGACAGGTCTGCACCGCTGAAGTTcagaccctgtgtgtgtgtgtgagtgagagagagatagagggagatcaAAGAGGACAGTGTCAGACAAGATAGAGCATAGCCACTGAAAACAGATACATTTTGGTGAGTGTGTGCTACCTGACAGCGCAGCTCTGACTTGGTGGGTGTGGCCAACAGGAAACGTACAAACTCCTTCCTGGTTAGAGGGGAGTGGTCATCAGCAGGCTGGGAACTCTGGGAAGGAGAAAATATGGTGTAGTTAGGATAGACAAGCCTCATGCACACTTAcggtattcacacacacaccttgatcAGGTTCTCCAGTTGCTCAGCCAGCTGCTCAATGCCGAAGAACCGAGCTTCCTCCAGGACCcctgagacagagaaagagatgaagtagctattagtgtgtgtgtgtgtgtaagtccaGTGTGTACATTGTGAGTGTGTGGCATACCCAGTGGGTTGATGCCGTCATTGATGATGAGTTGTCCGTGTCTCAGGTAGTTGAGGATTGGTTCAAAGTAGCCTGGACTCCTGTCTATCAGGTAGGCACCATGGGAGTCCTGTTTATTAccccacacatctacacacacacggAATTTGGGACATGAAAATTGAGTGGAGGAGAGTGTGAGTGGTGAATTGTGGGAGTGACATCATCACCTTTGTCTCGGAACATGTGGGCCAGCATGCTCGCTGGTTCTTTACTGACCAGAGTGCTCCtgaggagaaaacacaccacacaggttATGTGTATCAATAGAATGGAGTGGACAGACTGCAAGGTTGTCATGGTTACCGTGTGGTGGTGAAGCAGCAACCCCCAACGTTGAGCGTCAGCCAATCAGTGTGAGTTTGGAACCAGTCTGGACAACCAGGGTCATCCTGGGGGTCTGCACACTTTGTCTTTCTCGCATCTGAGGGAAGTCATACAGATAGCAAGTACATCCCACCCA
>TU430248
AGCCTTTATTGCAAAAGACATAAGACAGTAATTATACAGTGATAGTGTGATACAAAAATAGAACAACTTTTCACAATGATAAAGTGTAGCACCATGTGATGGAAATCCAACCCCTGGCATGGAGAAGATGGTCCATGTAGGATAATGTACATGTGGACCCATTAAAGTGAGACTCAGCCATATAACTTTTGCCATGAACCTCAGATTCACACTGCTGCAACGTGATAGCTGCGAGACCAAAACAGCGAGAAGTTTAGCCTCACACCGTTTGTTGTTGCGGAAGTTGGCCCGAATCTGCCGTATCTACCTTCAAAATACATATATTATTATCCAAACATGTAGAACCTTTTACGCCATATATACAAACATGTAGAACCTTTTACGCCATATATACAAACATGTGTACCAGAACTAAAACATTCCTGGGTCTCGTTTCACATTCACTCATGTCAGAGGAACAACCACTGCCCTCGGGCAGCTAAGTGACTCCTAAGGGTTGATATAGTATTGGGCAACTAGTCTCTTCTGAGAAGAGAAAATCAGTGGTGAGCTACACAGGGGGTTGGGAGGAATGACTTAAGGAccaggagtgtgtttgtgtggggttCAGTGGAGGAGTAGCACAATCTGAGACGTGTACGATAACCCTACTGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGGGACATGTGCAGTGGGGTTATCGCACACGCTGGGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGCACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGAGTCAGCATCTCTTCAAAGATGGCTCCCTTCACGTTGGAGCCCCGAAGGTTAGCTTCCTGTAGATCGCATCCAGACAGGTCACAgttctgagagagagggggagaaagagagggagggagctatGTTTGAgaggtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacctccaGGTCTGTGCCAGCCAGTGTAGCTCCTCTCAGGTTGCAGTTTTTCAGCTTGGCGTTCTTCAGTGTGGCAACTCGCAGGTTGATACCTGTCATCTGACTACCCTCCATGTCCACCCCCTTTAGGTTGGCACCTCCATGTTGGCTTTGACTCCAGCAGGGTCCTCAAAGTTACAGCCTCTCAGAGATGCACCCTCCGCATTAGAACACAGCATCTTAACACCCTGTAGGTTAGctccctgtaacacacacacacattagaacaCAGCATCTTAACaccctgtaacacacacacacacacacacattagaacaCAGCATCTTAACACCCTGTAGGTTAGctccctgtaacacacacacacagtaacacacgtCAAGGCAGGCTGAGGACAGGTCTGCCCGCTCCAGGTTGGCACCACTGAGGTTGGCGTGAGTGAGGTTGGCAGCTCTCAGGTTGGCCATCTTAAAGTTGATGTAGCGCAGGTCCAGGCGAGACAGGTCTGCACCGCTGAAGTTca
>TU430250
AGCCTTTATTGCAAAAGACATAAGACAGTAATTATACAGTGATAGTGTGATACAAAAATAGAACAACTTTTCACAATGATAAAGTGTAGCACCATGTGATGGAAATCCAACCCCTGGCATGGAGAAGATGGTCCATGTAGGATAATGTACATGTGGACCCATTAAAGTGAGACTCAGCCATATAACTTTTGCCATGAACCTCAGATTCACACTGCTGCAACGTGATAGCTGCGAGACCAAAACAGCGAGAAGTTTAGCCTCACACCGTTTGTTGTTGCGGAAGTTGGCCCGAATCTGCCGTATCTACCTTCAAAATACATATATTATTATCCAAACATGTAGAACCTTTTACGCCATATATACAAACATGTAGAACCTTTTACGCCATATATACAAACATGTGTACCAGAACTAAAACATTCCTGGGTCTCGTTTCACATTCACTCATGTCAGAGGAACAACCACTGCCCTCGGGCAGCTAAGTGACTCCTAAGGGTTGATATAGTATTGGGCAACTAGTCTCTTCTGAGAAGAGAAAATCAGTGGTGAGCTACACAGGGGGTTGGGAGGAATGACTTAAGGAccaggagtgtgtttgtgtggggttCAGTGGAGGAGTAGCACAATCTGAGACGTGTACGATAACCCTACTGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGCACACGCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGGGTTATCGTACACTCTGAGACATGTGCAGTGGAGTCAGCATCTCTTCAAAGATGGCTCCCTTCACGTTGGAGCCCCGAAGGTTAGCTTCCTGTAGATCGCATCCAGACAGGTCACAgttctgagagagagggggagaaagagagggagggagctatGTTTGAgaggtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacctccaGGTCTGTGCCAGCCAGTGTAGCTCCTCTCAGGTTGCAGTTTTTCAGCTTGGCGTTCTTCAGTGTGGCAACTCGCAGGTTGATACCTGTCATCTGACTACCCTCCATGTCCACCCCCTTTAGGTTGGCACCTCCATGTTGGCTTTGACTCCAGCAGGGTCCTCAAAGTTACAGCCTCTCAGAGATGCACCCTCCGCATTAGAACACAGCATCTTAACACCCTGTAGGTTAGctccctgtaacacacacacacacacacacacacacattagaacaCAGCATCTTAACACCCTGTAGGTTAGctccctgtaacacacacacacagtaacacacgtCAAGGCAGGCTGAGGACAGGTCTGCCCGCTCCAGGTTGGCACCACTGAGGTTGGCGTGAGTGAGGTTGGCAGCTCTCAGGTTGGCCATCTTAAAGTTGATGTAGCGCAGGTCCAGGCGAGACAGGTCTGCACCGCTGAAGTTcagaccctgtgtgtgtgtgtgagtgagagagagatagagggagatcaAAGAGGACAGTGTCAGACAAGATAGAGCATAGCCACTGAAAACAGATACATTTTGGTGAGTGTGTGCTACCTGACAGCGCAGCTCTGACTTGGTGGGTGTGGCCAACAGGAAACGTACAAACTCCTTCCTGGTTAGAGGGGAGTGGTCATCAGCAGGCTGGGAACTCTGGGAAGGAGAAAATATGGTGTAGTTAGGATAGACAAGCCTCATGCACACTTAcggtattcacacacacaccttgatcAGGTTCTCCAGTTGCTCAGCCAGCTGCTCAATGCCGAAGAACCGAGCTTCCTCCAGGACCcctgagacagagaaagagatgaagtagctattagtgtgtgtgtgtgtgtaagtccaGTGTGTACATTGTGAGTGTGTGGCATACCCAGTGGGTTGATGCCGTCATTGATGATGAGTTGTCCGTGTCTCAGGTAGTTGAGGATTGGTTCAAAGTAGCCTGGACTCCTGTCTATCAGGTAGGCACCATGGGAGTCCTGTTTATTAccccacacatctacacacacacggAATTTGGGACATGAAAATTGAGTGGAGGAGAGTGTGAGTGGTGAATTGTGGGAGTGACATCATCACCTTTGTCTCGGAACATGTGGGCCAGCATGCTCGCTGGTTCTTTACTGACCAGAGTGCTCCtgaggagaaaacacaccacacaggttATGTGTATCAATAGAATGGAGTGGACAGACTGCAAGGTTGTCATGGTTACCGTGTGGTGGTGAAGCAGCAACCCCCAACGTTGAGCGTCAGCCAATCAGTGTGAGTTTGGAACCAGTCTGGACAACCAGGGTCATCCTGGGGGTCTGCACACTTTGTCTTTCTCGCATCTGAGGGAAGTCATACAGATAGCAAGTACATCCCACCCA

Function

symbol description
kctd9 Enables cullin family protein binding activity; identical protein binding activity; and protein self-association. Predicted to be involved in intracellular signal transduction; protein homooligomerization; and protein ubiquitination.

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430244 False 2050 lncRNA 0.49 2 22033840 22035994
TU430245 False 2749 lncRNA 0.50 5 22033840 22036950
TU430248 False 1854 lncRNA 0.49 3 22033840 22035994
TU430250 True 2467 lncRNA 0.49 5 22033840 22036950

Neighbor

gene id symbol gene type direction distance location
LOC100135946 LOC100135946 coding upstream 33332 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 42914 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 75330 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 186603 21842068 ~ 21847237 (+)
LOC110523421 LOC106568255 coding upstream 210963 21816778 ~ 21822877 (+)
LOC110523429 acty coding downstream 9021 22045971 ~ 22053104 (+)
LOC110523432 LOC106567996 coding downstream 153418 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 731715 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 837220 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 905255 22942205 ~ 23007315 (+)
G378486 NA non-coding upstream 28816 21982512 ~ 22005024 (+)
G378489 NA non-coding upstream 52496 21980931 ~ 21981344 (+)
G378485 NA non-coding upstream 59742 21972588 ~ 21974098 (+)
G378478 NA non-coding upstream 80839 21952735 ~ 21953001 (+)
G378476 NA non-coding upstream 84504 21949085 ~ 21949336 (+)
G378513 NA non-coding downstream 433 22037383 ~ 22037854 (+)
G378570 NA non-coding downstream 2044 22038994 ~ 22039248 (+)
G378571 NA non-coding downstream 2399 22039349 ~ 22039566 (+)
G378573 NA non-coding downstream 3441 22040391 ~ 22040640 (+)
G378579 NA non-coding downstream 22592 22059542 ~ 22060247 (+)
LOC110523400 LOC106568542 other upstream 874921 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1197281 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1275339 20508074 ~ 20759255 (+)
G377022 NA other upstream 1436977 20591480 ~ 20596863 (+)
G376320 NA other upstream 2049992 19983261 ~ 19983848 (+)
G378660 NA other downstream 135585 22172535 ~ 22231920 (+)
G378832 NA other downstream 466802 22503752 ~ 22506270 (+)
G378868 NA other downstream 565160 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1587014 23623921 ~ 23678038 (+)

Expression


Co-expression Network