G378582


Basic Information

Item Value
gene id G378582
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22064967 ~ 22066212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430332
CAGGAACCACAATGAAAATATACCTTTTAAATATAAAATCAGATAcaagatgtatatatatattatttgtttTACATAATTTCCACAGTTTTGTACAATCATAAAGTTGATGTGGATTCATGATGAAGATTTACAGTAGGCCAGCCAGACAGTCGGCCACCcagacagatatacagtagatcaGCCAGCCAGATAGcaaaccaggcagccagccagtcagccacagACAGATACAGTAAACATTagaccagccagccagacagccaacatgccagccagccacccagacagatatacagtagaCCAGCCAGCCCTCAGTCAGCAAGACAGCCAGTTGACCAGACAGCCAGTCCAGTCAGCCTGCTCTGTGTGCCTGTGATCCGTCTGCAATGCGTCAGCAGCACCAGGGACTCCCTCTCCAGCCAGACACAGCTGCCAGTCACCGTCTAGCCCCTGGCTCACTGCTGGACACCCAGCACCCACCTGCACTCCATGGTGTccttattcctctctctctgtctctctgtctgtctctctcgcttggTCTCaatctaccccccctctctctttctgtgtcattctgtctctcgctctttttctgtctctcaagctctctctctccccctctctctcgctcggcctcaatctatcccactctctctctctctctctgacagaagtATCAGCGTATTTCAGACTGATCTCTGATTGGTGAATAGCTTATAGATTTGTCTACTGTTGTcacagagagagtgactgagaggAAGGGCTGTCAGTGCCAACAGGGTTATTCTGACGTTAGAGAGACAGCTGTCATATAAGCTTCAGGTTGAATTGCATGCACATccctgacaacctgaaatggtcccttcacacagacagtgtggtgaaacagagcctcttcaacctcaggaggctgaatgaATTTGTCTTGGCCTTTAAGACCTTCAAACTTCTACAGATACTCAATTGAGAGCCACCAGGTTGTCTACCCTGCactttagagactgctgccctatgtataTAGTcactgaacactggtcactttaaaaatgtttacataatgttttacacacttcatatgtatactgtattcCTGTCAAGGCtcattctatataactactgctgtacataccttTTATATTCATATACTGTTCATACTGCCTATAcacaccattttatatatatatacacacacacactatatatagtaccagtcaaaatgtttggacacgcctacccattc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430332 True 1246 lncRNA 0.45 1 22064967 22066212

Neighbor

gene id symbol gene type direction distance location
LOC110523429 acty coding upstream 11863 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 64459 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 74041 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 106457 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 217730 21842068 ~ 21847237 (+)
LOC110523432 LOC106567996 coding downstream 124156 22190368 ~ 22221369 (+)
LOC110523445 LOC106568100 coding downstream 702453 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 807958 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 875993 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 999442 23065654 ~ 23158020 (+)
G378579 NA non-coding upstream 4720 22059542 ~ 22060247 (+)
G378573 NA non-coding upstream 24327 22040391 ~ 22040640 (+)
G378571 NA non-coding upstream 25401 22039349 ~ 22039566 (+)
G378570 NA non-coding upstream 25719 22038994 ~ 22039248 (+)
G378513 NA non-coding upstream 27113 22037383 ~ 22037854 (+)
G378583 NA non-coding downstream 178 22066390 ~ 22067020 (+)
G378584 NA non-coding downstream 1693 22067905 ~ 22068991 (+)
G378585 NA non-coding downstream 3087 22069299 ~ 22069557 (+)
G378586 NA non-coding downstream 3731 22069943 ~ 22070292 (+)
G378588 NA non-coding downstream 5087 22071299 ~ 22071529 (+)
LOC110523400 LOC106568542 other upstream 906048 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1228408 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1306466 20508074 ~ 20759255 (+)
G377022 NA other upstream 1468104 20591480 ~ 20596863 (+)
G376320 NA other upstream 2081119 19983261 ~ 19983848 (+)
G378660 NA other downstream 106323 22172535 ~ 22231920 (+)
G378832 NA other downstream 437540 22503752 ~ 22506270 (+)
G378868 NA other downstream 535898 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1557752 23623921 ~ 23678038 (+)

Expression


Co-expression Network