G378660


Basic Information

Item Value
gene id G378660
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 22172535 ~ 22231920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU430417
acataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccacttcttgccagatttgtgcaatatacgactgattgttgtcctatggacagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctctgtgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggttcatctacaatgattgaagttgatttaactagggacatcaataagggatcatagctttcacctggattcacctgatcagtctatgtcatggaaagagcaggtgtccttaatgttttgtacactcagtgtaggttTTCAATTGTTTTGTATTCAGGGCTGCAGTGGACTCTGTGACCGTCCCCTAATTGCTAACATTACGTAATAACGCTGATATGTTTGATAAAATGGATAAAACCAGGATATAAAGTATTTGTTACTGTtttagagctgatgtagagcaggggtgtgtgtgtataaggtatgtgcgtgtctgtgtgtgttacctgtcttgAAGAGTGTGTACATCTCATGAGAGGTGAGGTCAGTGTGTATGTCCACTCTGTATCCTAGTCTGGTCAGGGTACGGTGGAGTCTTTTGGCGTCTTTCTCTGCCCCTGGTCTCCTGCACAGTGGTACACCGTGGTCAAAGTTCGACACTGCGACCAGGACAGCGCGGTTACACTCCTCATCGCCAGCCTTTGTCCGTCTCCACAGTGGCATTTCCAAAAATATAGAGACCATTGGTCCAGTTGGTCGCTgcagtctggttcctctcaaggtttctacCAATCCCTTTGGAGTCTCAACCTATCCCTTGCTTCTGTCGTCTCTGCTTGCTCTCTGGGGGTTTAGGTCGGATTCAATGTCTCTGACAAATGTACTAGTATATTGTGCACAAAGTCCAATGTGATAGAAAGAGTGTAGATCAGAGTGCCGAATTGAGTGACTTCTCTCTTGGGGTAAGGTTCAACAGGTAAGAGCCACCTGAAtacaccaccagcaggtaaataTCCACCTGAATACACCACCAGCACGTATACATCCACCTAAGCTGTGTCTCAGCTTCTTTAGAATGTCAGTGTAAAGTCTGTGTGTTTATGAGTCAGGTTCAGGTGTGTATGTATTTATACTGCAGCTGAACACTGTTCCAACTTGCAGACAGATGGGCTACCGCCAATAGCCCTGCCCTTTACACTAACACACCTGGAAGGCCAGAAGTGGAATATCAGGATCACATCCTGTTGCGTCACAGTATTACCTAACTCTGCTCTTTCTGTTTTTCCCTCATTTCCTCCTACATTCATCTACTATGTTCTTTCTGTCTGCTGGGAAAGCCATCTCAGTGAAACCCGTGTAAGCTCATCTCTGGACTTAACCATATTTCACAACCTATACTATAGCAATGGATAACCACCTCATCTCATTTGTAAAGGGCTTGCTGGGCAGACTGTCATCAAT
>TU430418
acataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccacttcttgccagatttgtgcaatatacgactgattgttgtcctatggacagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctctgtgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggttcatctacaatgattgaagttgatttaactagggacatcaataagggatcatagctttcacctggattcacctgatcagtctatgtcatggaaagagcaggtgtccttaatgttttgtacactcagtgtaggttTTCAATTGTTTTGTATTCAGGGCTGCAGTGGACTCTGTGACCGTCCCCTAATTGCTAACATTACGTAATAACGCTGATATGTTTGATAAAATGGATAAAACCAGGATATAAAGTATTTGTTACTGTtttagagctgatgtagagcaggggtgtgtgtgtataaggtatgtgcgtgtctgtgtgtgttacctgtcttgAAGAGTGTGTACATCTCATGAGAGGTGAGGTCAGTGTGTATGTCCACTCTGTATCCTAGTCTGGTCAGGGTACGGTGGAGTCTTTTGGCGTCTTTCTCTGCCCCTGGTCTCCTGCACAGTGGTACACCGTGGTCAAAGTTCGACACTGCGACCAGGACAGCGCGGTTACACTCCTCATCGCCAGCCTTTGTCCGTCTCCACAGTGGCATTTCCAAAAATATAGAGACCATTGGTCCAGTTGGTCGCTgcagtctggttcctctcaaggtttctacCAATCCCTTTGGAGTCTCAACCTATCCCTTGCTTCTGTCGTCTCTGCTTGCTCTCTGGGGGTTTAGGTCGGATTCAATGTCTCTGACAAATGTACTAGTATATTGTGCACAAAGTCCAATGTGATAGAAAGAGTGTAGATCAGAGTGCCGAATTGAGTGACTTCTCTCTTGGGGTAAGGTTCAACAGGTAAGAGCCACCTGAAtacaccaccagcaggtaaataTCCACCTGAATACACCACCAGCACGTATACATCCACCTAAGCTGTGTCTCAGCTTCTTTAGAATGTCAGTGTAAAGTCTGTGTGTTTATGAGTCAGGTTCAGGTGTGTATGTATTTATACTGCAGCTGAACACTGTTCCAACTTGCAGACAGATGGGCTACCGCCAATAGCCCTGCCCTTTACACTAACACACCTGGAAGGCCAGAAGTGGAATATCAGGATCACATCCTGTTGCGTCACAGTATTACCTAACTCTGCTCTTTCTGTTTTTCCCTCATTTCCTCCTACATTCATCTACTATGTTCTTTCTGTCTGCTGGGAAAGCCATCTCAGTGAAACCCGTGTAAGCTCATCTCTGGACTTAACCATATTTCACAACCTATACTATAGCAATGGATAACCACCTCATCTCATTTGTAAAGGGCTTGCTGGGCAGACTGTCATCAAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU430417 False 1818 TUCP 0.44 4 22172535 22231920
TU430418 True 1818 TUCP 0.44 4 22172535 22231920

Neighbor

gene id symbol gene type direction distance location
LOC110523429 acty coding upstream 119431 22045971 ~ 22053104 (+)
LOC100135946 LOC100135946 coding upstream 172027 21997656 ~ 22000508 (+)
LOC110522824 LOC106563065 coding upstream 181609 21961475 ~ 21990926 (+)
LOC110523424 LOC106567937 coding upstream 214025 21954083 ~ 21958510 (+)
LOC110523423 LOC106568289 coding upstream 325298 21842068 ~ 21847237 (+)
LOC110523445 LOC106568100 coding downstream 536745 22768665 ~ 22799421 (+)
dmgdh dmgdh coding downstream 642250 22874170 ~ 22903435 (+)
lhfpl2a lhfpl2 coding downstream 710285 22942205 ~ 23007315 (+)
LOC110523451 ap3b1 coding downstream 833734 23065654 ~ 23158020 (+)
tbca tbca coding downstream 961954 23193874 ~ 23203566 (+)
G378653 NA non-coding upstream 12347 22159909 ~ 22160188 (+)
G378630 NA non-coding upstream 21065 22128817 ~ 22151470 (+)
G378615 NA non-coding upstream 66182 22100494 ~ 22106353 (+)
G378590 NA non-coding upstream 67953 22072417 ~ 22104582 (+)
G378588 NA non-coding upstream 101006 22071299 ~ 22071529 (+)
G378678 NA non-coding downstream 5531 22237451 ~ 22237915 (+)
G378682 NA non-coding downstream 9369 22241289 ~ 22241544 (+)
G378683 NA non-coding downstream 9714 22241634 ~ 22241965 (+)
G378684 NA non-coding downstream 10188 22242108 ~ 22242323 (+)
G378685 NA non-coding downstream 11717 22243637 ~ 22243875 (+)
LOC110523400 LOC106568542 other upstream 1013616 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 1335976 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 1414034 20508074 ~ 20759255 (+)
G377022 NA other upstream 1575672 20591480 ~ 20596863 (+)
G376320 NA other upstream 2188687 19983261 ~ 19983848 (+)
G378832 NA other downstream 271832 22503752 ~ 22506270 (+)
G378868 NA other downstream 370190 22602110 ~ 22629669 (+)
LOC110522832 LOC106567816 other downstream 1392044 23623921 ~ 23678038 (+)
G380340 NA other downstream 1508514 23740434 ~ 23741459 (+)

Expression


Co-expression Network